Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.72■□□□□ 0.59
TIMP4Q99727 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
TIMP4Q99727 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.72■□□□□ 0.59
TIMP4Q99727 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.72■□□□□ 0.59
TIMP4Q99727 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
TIMP4Q99727 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
TIMP4Q99727 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TIMP4Q99727 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.72■□□□□ 0.59
TIMP4Q99727 PLK5-205ENST00000642079 1969 ntBASIC18.72■□□□□ 0.59
TIMP4Q99727 GABARAPL3-202ENST00000624044 1851 ntBASIC18.71■□□□□ 0.59
TIMP4Q99727 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TIMP4Q99727 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
TIMP4Q99727 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.71■□□□□ 0.59
TIMP4Q99727 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.71■□□□□ 0.59
TIMP4Q99727 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.71■□□□□ 0.59
TIMP4Q99727 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
TIMP4Q99727 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TIMP4Q99727 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.71■□□□□ 0.59
TIMP4Q99727 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.71■□□□□ 0.59
TIMP4Q99727 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TIMP4Q99727 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.58
TIMP4Q99727 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP4Q99727 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP4Q99727 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP4Q99727 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.7■□□□□ 0.58
TIMP4Q99727 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP4Q99727 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP4Q99727 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.7■□□□□ 0.58
TIMP4Q99727 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.7■□□□□ 0.58
TIMP4Q99727 AC010980.2-201ENST00000587099 1412 ntBASIC18.7■□□□□ 0.58
TIMP4Q99727 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP4Q99727 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.7■□□□□ 0.58
TIMP4Q99727 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP4Q99727 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TIMP4Q99727 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
TIMP4Q99727 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
TIMP4Q99727 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.69■□□□□ 0.58
TIMP4Q99727 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TIMP4Q99727 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP4Q99727 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.69■□□□□ 0.58
TIMP4Q99727 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TIMP4Q99727 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.69■□□□□ 0.58
TIMP4Q99727 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.69■□□□□ 0.58
TIMP4Q99727 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TIMP4Q99727 BX276092.2-201ENST00000417668 665 ntBASIC18.69■□□□□ 0.58
TIMP4Q99727 CDV3P1-201ENST00000471403 739 ntBASIC18.69■□□□□ 0.58
TIMP4Q99727 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.69■□□□□ 0.58
TIMP4Q99727 AC098934.4-201ENST00000564127 592 ntBASIC18.69■□□□□ 0.58
TIMP4Q99727 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.69■□□□□ 0.58
TIMP4Q99727 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
TIMP4Q99727 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP4Q99727 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.69■□□□□ 0.58
TIMP4Q99727 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP4Q99727 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
TIMP4Q99727 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.69■□□□□ 0.58
TIMP4Q99727 AC006128.1-201ENST00000624704 1661 ntBASIC18.69■□□□□ 0.58
TIMP4Q99727 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP4Q99727 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP4Q99727 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TIMP4Q99727 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TIMP4Q99727 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.68■□□□□ 0.58
TIMP4Q99727 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.68■□□□□ 0.58
TIMP4Q99727 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TIMP4Q99727 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.68■□□□□ 0.58
TIMP4Q99727 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.68■□□□□ 0.58
TIMP4Q99727 CD99P1-205ENST00000527459 561 ntBASIC18.68■□□□□ 0.58
TIMP4Q99727 KRT18P6-201ENST00000555540 1265 ntBASIC18.68■□□□□ 0.58
TIMP4Q99727 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
TIMP4Q99727 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.68■□□□□ 0.58
TIMP4Q99727 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TIMP4Q99727 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
TIMP4Q99727 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms