Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.89■□□□□ 0.93
SKA1Q96BD8 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.89■□□□□ 0.93
SKA1Q96BD8 AL162412.1-201ENST00000567129 965 ntBASIC20.89■□□□□ 0.93
SKA1Q96BD8 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.89■□□□□ 0.93
SKA1Q96BD8 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.89■□□□□ 0.93
SKA1Q96BD8 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
SKA1Q96BD8 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.89■□□□□ 0.93
SKA1Q96BD8 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.88■□□□□ 0.93
SKA1Q96BD8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.88■□□□□ 0.93
SKA1Q96BD8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.88■□□□□ 0.93
SKA1Q96BD8 AL591742.1-201ENST00000604433 565 ntBASIC20.88■□□□□ 0.93
SKA1Q96BD8 AC092118.2-201ENST00000613495 667 ntBASIC20.88■□□□□ 0.93
SKA1Q96BD8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.88■□□□□ 0.93
SKA1Q96BD8 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.88■□□□□ 0.93
SKA1Q96BD8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA1Q96BD8 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.87■□□□□ 0.93
SKA1Q96BD8 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SKA1Q96BD8 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA1Q96BD8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 RNF165-205ENST00000588679 2904 ntBASIC20.86■□□□□ 0.93
SKA1Q96BD8 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA1Q96BD8 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.86■□□□□ 0.93
SKA1Q96BD8 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 RNA5SP413-201ENST00000516373 109 ntBASIC20.85■□□□□ 0.93
SKA1Q96BD8 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
SKA1Q96BD8 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA1Q96BD8 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms