Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HMGCS1Q01581 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGCS1Q01581 RBM17P2-201ENST00000616397 1405 ntBASIC19.67■□□□□ 0.74
HMGCS1Q01581 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGCS1Q01581 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGCS1Q01581 AC091799.1-201ENST00000422823 811 ntBASIC19.66■□□□□ 0.74
HMGCS1Q01581 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 AFG3L1P-217ENST00000557444 2447 ntBASIC19.66■□□□□ 0.74
HMGCS1Q01581 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGCS1Q01581 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGCS1Q01581 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGCS1Q01581 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HMGCS1Q01581 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
HMGCS1Q01581 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGCS1Q01581 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGCS1Q01581 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGCS1Q01581 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGCS1Q01581 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGCS1Q01581 AC087623.3-201ENST00000607047 1098 ntBASIC19.65■□□□□ 0.74
HMGCS1Q01581 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HMGCS1Q01581 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGCS1Q01581 AC099778.1-201ENST00000568593 1911 ntBASIC19.64■□□□□ 0.74
HMGCS1Q01581 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGCS1Q01581 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGCS1Q01581 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGCS1Q01581 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGCS1Q01581 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS1Q01581 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS1Q01581 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS1Q01581 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS1Q01581 KRT19P1-201ENST00000405746 1186 ntBASIC19.64■□□□□ 0.73
HMGCS1Q01581 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS1Q01581 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGCS1Q01581 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGCS1Q01581 MIR2861-201ENST00000636310 90 ntBASIC19.64■□□□□ 0.73
HMGCS1Q01581 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGCS1Q01581 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HMGCS1Q01581 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
HMGCS1Q01581 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGCS1Q01581 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HMGCS1Q01581 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.64■□□□□ 0.73
HMGCS1Q01581 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 UBE2DNL-204ENST00000602536 740 ntBASIC19.63■□□□□ 0.73
HMGCS1Q01581 AC243732.1-201ENST00000612648 864 ntBASIC19.63■□□□□ 0.73
HMGCS1Q01581 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HMGCS1Q01581 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGCS1Q01581 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
HMGCS1Q01581 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
HMGCS1Q01581 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGCS1Q01581 SLC7A5P1-201ENST00000568957 537 ntBASIC19.62■□□□□ 0.73
HMGCS1Q01581 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
HMGCS1Q01581 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HMGCS1Q01581 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HMGCS1Q01581 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGCS1Q01581 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGCS1Q01581 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms