Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NEK3P51956 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
NEK3P51956 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21■□□□□ 0.95
NEK3P51956 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
NEK3P51956 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21■□□□□ 0.95
NEK3P51956 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 GUSBP6-202ENST00000438529 1198 ntBASIC21■□□□□ 0.95
NEK3P51956 AC245052.3-201ENST00000450182 901 ntBASIC21■□□□□ 0.95
NEK3P51956 AC069236.1-201ENST00000604339 616 ntBASIC21■□□□□ 0.95
NEK3P51956 AC008694.1-202ENST00000636953 945 ntBASIC21■□□□□ 0.95
NEK3P51956 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21■□□□□ 0.95
NEK3P51956 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21■□□□□ 0.95
NEK3P51956 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21■□□□□ 0.95
NEK3P51956 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
NEK3P51956 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
NEK3P51956 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
NEK3P51956 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.99■□□□□ 0.95
NEK3P51956 AC006128.1-201ENST00000624704 1661 ntBASIC20.99■□□□□ 0.95
NEK3P51956 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.99■□□□□ 0.95
NEK3P51956 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NEK3P51956 AC073314.1-201ENST00000568729 2216 ntBASIC20.99■□□□□ 0.95
NEK3P51956 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
NEK3P51956 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NEK3P51956 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.99■□□□□ 0.95
NEK3P51956 AL591742.1-201ENST00000604433 565 ntBASIC20.99■□□□□ 0.95
NEK3P51956 OR10C1-204ENST00000622521 1039 ntBASIC20.99■□□□□ 0.95
NEK3P51956 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.99■□□□□ 0.95
NEK3P51956 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.99■□□□□ 0.95
NEK3P51956 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
NEK3P51956 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NEK3P51956 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.98■□□□□ 0.95
NEK3P51956 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.98■□□□□ 0.95
NEK3P51956 AL162412.1-201ENST00000567129 965 ntBASIC20.98■□□□□ 0.95
NEK3P51956 AC142086.2-201ENST00000569753 217 ntBASIC20.98■□□□□ 0.95
NEK3P51956 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.98■□□□□ 0.95
NEK3P51956 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NEK3P51956 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.98■□□□□ 0.95
NEK3P51956 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NEK3P51956 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.97■□□□□ 0.95
NEK3P51956 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NEK3P51956 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.97■□□□□ 0.95
NEK3P51956 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.97■□□□□ 0.95
NEK3P51956 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.97■□□□□ 0.95
NEK3P51956 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.97■□□□□ 0.95
NEK3P51956 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.97■□□□□ 0.95
NEK3P51956 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.97■□□□□ 0.95
NEK3P51956 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NEK3P51956 PLK5-205ENST00000642079 1969 ntBASIC20.97■□□□□ 0.95
NEK3P51956 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
NEK3P51956 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NEK3P51956 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.96■□□□□ 0.95
NEK3P51956 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.96■□□□□ 0.95
NEK3P51956 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.96■□□□□ 0.95
NEK3P51956 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NEK3P51956 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.96■□□□□ 0.95
NEK3P51956 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.96■□□□□ 0.95
NEK3P51956 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms