Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL5A1P20908 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.78■□□□□ 0.76
COL5A1P20908 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL5A1P20908 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL5A1P20908 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL5A1P20908 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A1P20908 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.77■□□□□ 0.76
COL5A1P20908 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A1P20908 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A1P20908 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.77■□□□□ 0.76
COL5A1P20908 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A1P20908 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A1P20908 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.77■□□□□ 0.76
COL5A1P20908 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.77■□□□□ 0.76
COL5A1P20908 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.77■□□□□ 0.76
COL5A1P20908 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.77■□□□□ 0.76
COL5A1P20908 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
COL5A1P20908 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A1P20908 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A1P20908 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.77■□□□□ 0.76
COL5A1P20908 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
COL5A1P20908 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL5A1P20908 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
COL5A1P20908 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
COL5A1P20908 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL5A1P20908 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL5A1P20908 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.75
COL5A1P20908 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.77■□□□□ 0.75
COL5A1P20908 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
COL5A1P20908 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
COL5A1P20908 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.76■□□□□ 0.75
COL5A1P20908 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL5A1P20908 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
COL5A1P20908 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.76■□□□□ 0.75
COL5A1P20908 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.76■□□□□ 0.75
COL5A1P20908 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.76■□□□□ 0.75
COL5A1P20908 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.76■□□□□ 0.75
COL5A1P20908 AC133561.5-201ENST00000635547 218 ntBASIC19.76■□□□□ 0.75
COL5A1P20908 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.76■□□□□ 0.75
COL5A1P20908 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL5A1P20908 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A1P20908 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A1P20908 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A1P20908 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A1P20908 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A1P20908 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.75■□□□□ 0.75
COL5A1P20908 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.75■□□□□ 0.75
COL5A1P20908 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.75■□□□□ 0.75
COL5A1P20908 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.75■□□□□ 0.75
COL5A1P20908 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL5A1P20908 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A1P20908 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A1P20908 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL5A1P20908 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
COL5A1P20908 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
COL5A1P20908 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 AL390719.1-204ENST00000412397 1219 ntBASIC19.74■□□□□ 0.75
COL5A1P20908 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 PRKY-204ENST00000533551 1019 ntBASIC19.74■□□□□ 0.75
COL5A1P20908 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.74■□□□□ 0.75
COL5A1P20908 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.74■□□□□ 0.75
COL5A1P20908 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL5A1P20908 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.73■□□□□ 0.75
COL5A1P20908 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A1P20908 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A1P20908 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A1P20908 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A1P20908 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL5A1P20908 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 156.3 ms