Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.81■□□□□ 0.92
COL4A2P08572 AL353708.3-201ENST00000610272 989 ntBASIC20.81■□□□□ 0.92
COL4A2P08572 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.81■□□□□ 0.92
COL4A2P08572 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A2P08572 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
COL4A2P08572 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
COL4A2P08572 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL4A2P08572 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A2P08572 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A2P08572 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A2P08572 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 C9orf163-202ENST00000624034 2573 ntBASIC20.8■□□□□ 0.92
COL4A2P08572 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A2P08572 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A2P08572 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A2P08572 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A2P08572 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COL4A2P08572 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.79■□□□□ 0.92
COL4A2P08572 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.79■□□□□ 0.92
COL4A2P08572 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A2P08572 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A2P08572 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A2P08572 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A2P08572 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL4A2P08572 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A2P08572 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.78■□□□□ 0.92
COL4A2P08572 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 AP001412.1-201ENST00000608405 714 ntBASIC20.78■□□□□ 0.92
COL4A2P08572 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A2P08572 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL4A2P08572 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A2P08572 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.78■□□□□ 0.92
COL4A2P08572 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
COL4A2P08572 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL4A2P08572 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 NUDT16P1-203ENST00000513809 620 ntBASIC20.78■□□□□ 0.92
COL4A2P08572 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.78■□□□□ 0.92
COL4A2P08572 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A2P08572 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A2P08572 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A2P08572 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A2P08572 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A2P08572 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A2P08572 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A2P08572 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A2P08572 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
COL4A2P08572 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A2P08572 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.77■□□□□ 0.92
COL4A2P08572 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.77■□□□□ 0.92
COL4A2P08572 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A2P08572 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.77■□□□□ 0.92
COL4A2P08572 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A2P08572 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A2P08572 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A2P08572 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.77■□□□□ 0.92
COL4A2P08572 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A2P08572 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL4A2P08572 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.77■□□□□ 0.91
COL4A2P08572 AC242852.2-201ENST00000615738 1807 ntBASIC20.76■□□□□ 0.91
COL4A2P08572 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A2P08572 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.76■□□□□ 0.91
COL4A2P08572 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A2P08572 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.76■□□□□ 0.91
COL4A2P08572 AL121829.2-201ENST00000620908 328 ntBASIC20.76■□□□□ 0.91
COL4A2P08572 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A2P08572 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A2P08572 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.76■□□□□ 0.91
COL4A2P08572 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL4A2P08572 AC012676.1-201ENST00000574705 1949 ntBASIC20.76■□□□□ 0.91
COL4A2P08572 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A2P08572 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A2P08572 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A2P08572 AL390719.1-204ENST00000412397 1219 ntBASIC20.75■□□□□ 0.91
COL4A2P08572 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A2P08572 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.75■□□□□ 0.91
COL4A2P08572 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
COL4A2P08572 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A2P08572 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.75■□□□□ 0.91
COL4A2P08572 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL4A2P08572 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
COL4A2P08572 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A2P08572 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A2P08572 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A2P08572 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A2P08572 AC124283.5-201ENST00000624661 1809 ntBASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms