Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
HLA-DQB2P05538 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 KRT8P36-201ENST00000489121 1440 ntBASIC20.74■□□□□ 0.91
HLA-DQB2P05538 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 OR10C1-204ENST00000622521 1039 ntBASIC20.74■□□□□ 0.91
HLA-DQB2P05538 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQB2P05538 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HLA-DQB2P05538 GABARAPL3-202ENST00000624044 1851 ntBASIC20.73■□□□□ 0.91
HLA-DQB2P05538 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 AC100791.3-201ENST00000617619 330 ntBASIC20.72■□□□□ 0.91
HLA-DQB2P05538 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 AC020907.5-201ENST00000624372 1936 ntBASIC20.72■□□□□ 0.91
HLA-DQB2P05538 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.72■□□□□ 0.91
HLA-DQB2P05538 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 MCRIP2P1-201ENST00000394346 511 ntBASIC20.71■□□□□ 0.91
HLA-DQB2P05538 AL355472.2-201ENST00000422958 438 ntBASIC20.71■□□□□ 0.91
HLA-DQB2P05538 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 AL356652.1-201ENST00000615962 565 ntBASIC20.71■□□□□ 0.91
HLA-DQB2P05538 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQB2P05538 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
HLA-DQB2P05538 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
HLA-DQB2P05538 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
HLA-DQB2P05538 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
HLA-DQB2P05538 AC010980.2-201ENST00000587099 1412 ntBASIC20.7■□□□□ 0.9
HLA-DQB2P05538 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 AC133552.2-202ENST00000575694 574 ntBASIC20.7■□□□□ 0.9
HLA-DQB2P05538 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HLA-DQB2P05538 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms