Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SDCBPO00560 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.32■□□□□ 0.36
SDCBPO00560 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.32■□□□□ 0.36
SDCBPO00560 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SDCBPO00560 TPRG1LP1-201ENST00000598702 760 ntBASIC17.32■□□□□ 0.36
SDCBPO00560 AC087289.5-201ENST00000586076 3175 ntBASIC17.32■□□□□ 0.36
SDCBPO00560 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
SDCBPO00560 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.31■□□□□ 0.36
SDCBPO00560 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SDCBPO00560 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
SDCBPO00560 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.31■□□□□ 0.36
SDCBPO00560 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SDCBPO00560 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.31■□□□□ 0.36
SDCBPO00560 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.31■□□□□ 0.36
SDCBPO00560 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC17.31■□□□□ 0.36
SDCBPO00560 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.31■□□□□ 0.36
SDCBPO00560 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.31■□□□□ 0.36
SDCBPO00560 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.31■□□□□ 0.36
SDCBPO00560 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SDCBPO00560 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SDCBPO00560 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
SDCBPO00560 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.3■□□□□ 0.36
SDCBPO00560 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SDCBPO00560 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.3■□□□□ 0.36
SDCBPO00560 AC079140.4-201ENST00000507448 529 ntBASIC17.3■□□□□ 0.36
SDCBPO00560 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SDCBPO00560 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.3■□□□□ 0.36
SDCBPO00560 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.3■□□□□ 0.36
SDCBPO00560 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.3■□□□□ 0.36
SDCBPO00560 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.3■□□□□ 0.36
SDCBPO00560 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.3■□□□□ 0.36
SDCBPO00560 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.3■□□□□ 0.36
SDCBPO00560 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SDCBPO00560 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SDCBPO00560 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.29■□□□□ 0.36
SDCBPO00560 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SDCBPO00560 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC17.29■□□□□ 0.36
SDCBPO00560 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
SDCBPO00560 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.29■□□□□ 0.36
SDCBPO00560 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.29■□□□□ 0.36
SDCBPO00560 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SDCBPO00560 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SDCBPO00560 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.28■□□□□ 0.36
SDCBPO00560 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.28■□□□□ 0.36
SDCBPO00560 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SDCBPO00560 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.28■□□□□ 0.36
SDCBPO00560 AC027612.3-201ENST00000413684 1047 ntBASIC17.28■□□□□ 0.36
SDCBPO00560 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.28■□□□□ 0.36
SDCBPO00560 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms