Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YJL195CYJL195C 702 nt8.61□□□□□ -1.03
UPF3P48412 MRS6YOR370C 1812 nt8.61□□□□□ -1.03
UPF3P48412 GAL3YDR009W 1563 nt8.61□□□□□ -1.03
UPF3P48412 YKL133CYKL133C 1392 nt8.61□□□□□ -1.03
UPF3P48412 TOK1YJL093C 2076 nt8.6□□□□□ -1.03
UPF3P48412 DLD3YEL071W 1491 nt8.6□□□□□ -1.03
UPF3P48412 TPS1YBR126C 1488 nt8.6□□□□□ -1.03
UPF3P48412 THI72YOR192C 1800 nt8.6□□□□□ -1.03
UPF3P48412 CWP2YKL096W-A 279 nt8.6□□□□□ -1.03
UPF3P48412 ODC1YPL134C 933 nt8.6□□□□□ -1.03
UPF3P48412 RIB7YBR153W 735 nt8.6□□□□□ -1.03
UPF3P48412 YHR219WYHR219W 1875 nt8.6□□□□□ -1.03
UPF3P48412 SSL2YIL143C 2532 nt8.59□□□□□ -1.03
UPF3P48412 YDR455CYDR455C 309 nt8.59□□□□□ -1.03
UPF3P48412 DMA2YNL116W 1569 nt8.57□□□□□ -1.04
UPF3P48412 TMA23YMR269W 636 nt8.55□□□□□ -1.04
UPF3P48412 MET8YBR213W 825 nt8.55□□□□□ -1.04
UPF3P48412 LSM5YER146W 282 nt8.54□□□□□ -1.04
UPF3P48412 ERG13YML126C 1476 nt8.53□□□□□ -1.04
UPF3P48412 YEL008WYEL008W 381 nt8.53□□□□□ -1.04
UPF3P48412 RRT8YOL048C 1029 nt8.53□□□□□ -1.04
UPF3P48412 PSD1YNL169C 1503 nt8.53□□□□□ -1.04
UPF3P48412 DDI1YER143W 1287 nt8.52□□□□□ -1.05
UPF3P48412 YLR349WYLR349W 507 nt8.52□□□□□ -1.05
UPF3P48412 CYT1YOR065W 930 nt8.52□□□□□ -1.05
UPF3P48412 CCT5YJR064W 1689 nt8.52□□□□□ -1.05
UPF3P48412 RPD3YNL330C 1302 nt8.52□□□□□ -1.05
UPF3P48412 MDM35YKL053C-A 261 nt8.51□□□□□ -1.05
UPF3P48412 LSR1LSR1 1175 nt8.51□□□□□ -1.05
UPF3P48412 ITR2YOL103W 1830 nt8.51□□□□□ -1.05
UPF3P48412 VMA11YPL234C 495 nt8.5□□□□□ -1.05
UPF3P48412 IMO32YGR031W 1029 nt8.49□□□□□ -1.05
UPF3P48412 PAB1YER165W 1734 nt8.49□□□□□ -1.05
UPF3P48412 SAC7YDR389W 1965 nt8.48□□□□□ -1.05
UPF3P48412 YHR218WYHR218W 1812 nt8.48□□□□□ -1.05
UPF3P48412 STE4YOR212W 1272 nt8.48□□□□□ -1.05
UPF3P48412 KRR1YCL059C 951 nt8.47□□□□□ -1.05
UPF3P48412 RAD51YER095W 1203 nt8.47□□□□□ -1.05
UPF3P48412 TIM44YIL022W 1296 nt8.47□□□□□ -1.05
UPF3P48412 SNZ1YMR096W 894 nt8.46□□□□□ -1.06
UPF3P48412 DAK2YFL053W 1776 nt8.45□□□□□ -1.06
UPF3P48412 YMR262WYMR262W 942 nt8.45□□□□□ -1.06
UPF3P48412 TIP1YBR067C 633 nt8.44□□□□□ -1.06
UPF3P48412 YPR126CYPR126C 309 nt8.44□□□□□ -1.06
UPF3P48412 YHL008CYHL008C 1884 nt8.41□□□□□ -1.06
UPF3P48412 ADE8YDR408C 645 nt8.41□□□□□ -1.06
UPF3P48412 YJR114WYJR114W 393 nt8.41□□□□□ -1.06
UPF3P48412 RPC31YNL151C 756 nt8.41□□□□□ -1.06
UPF3P48412 SNX3YOR357C 489 nt8.41□□□□□ -1.06
UPF3P48412 RIM2YBR192W 1134 nt8.4□□□□□ -1.06
UPF3P48412 HXT10YFL011W 1641 nt8.4□□□□□ -1.07
UPF3P48412 YMR265CYMR265C 1386 nt8.39□□□□□ -1.07
UPF3P48412 NAS6YGR232W 687 nt8.39□□□□□ -1.07
UPF3P48412 YNR064CYNR064C 873 nt8.39□□□□□ -1.07
UPF3P48412 FRA1YLL029W 2250 nt8.38□□□□□ -1.07
UPF3P48412 ELO1YJL196C 933 nt8.36□□□□□ -1.07
UPF3P48412 OPI3YJR073C 621 nt8.36□□□□□ -1.07
UPF3P48412 HXK1YFR053C 1458 nt8.35□□□□□ -1.07
UPF3P48412 TVP23YDR084C 600 nt8.35□□□□□ -1.07
UPF3P48412 YFR036W-AYFR036W-A 651 nt8.35□□□□□ -1.07
UPF3P48412 CPD1YGR247W 720 nt8.35□□□□□ -1.07
UPF3P48412 HAP5YOR358W 729 nt8.35□□□□□ -1.07
UPF3P48412 KEL3YPL263C 1956 nt8.34□□□□□ -1.07
UPF3P48412 RPN14YGL004C 1254 nt8.34□□□□□ -1.07
UPF3P48412 MHF1YOL086W-A 273 nt8.34□□□□□ -1.07
UPF3P48412 DPL1YDR294C 1770 nt8.34□□□□□ -1.07
UPF3P48412 CTI6YPL181W 1521 nt8.34□□□□□ -1.08
UPF3P48412 IML3YBR107C 738 nt8.33□□□□□ -1.08
UPF3P48412 CBK1YNL161W 2271 nt8.33□□□□□ -1.08
UPF3P48412 AGP3YFL055W 1677 nt8.33□□□□□ -1.08
UPF3P48412 YHR131CYHR131C 2553 nt8.32□□□□□ -1.08
UPF3P48412 SUV3YPL029W 2214 nt8.32□□□□□ -1.08
UPF3P48412 SPS100YHR139C 981 nt8.31□□□□□ -1.08
UPF3P48412 YRF1-3YGR296W 5580 nt8.3□□□□□ -1.08
UPF3P48412 YRF1-6YNL339C 5580 nt8.3□□□□□ -1.08
UPF3P48412 YRF1-7YPL283C 5580 nt8.3□□□□□ -1.08
UPF3P48412 INH1YDL181W 258 nt8.3□□□□□ -1.08
UPF3P48412 ADH7YCR105W 1086 nt8.29□□□□□ -1.08
UPF3P48412 TAF13YML098W 504 nt8.29□□□□□ -1.08
UPF3P48412 snR31snR31 225 nt8.29□□□□□ -1.08
UPF3P48412 ALD5YER073W 1563 nt8.29□□□□□ -1.08
UPF3P48412 YIL177CYIL177C 5277 nt8.27□□□□□ -1.09
UPF3P48412 SWT21YNL187W 1074 nt8.27□□□□□ -1.09
UPF3P48412 LEU4YNL104C 1860 nt8.27□□□□□ -1.09
UPF3P48412 MTO1YGL236C 2010 nt8.27□□□□□ -1.09
UPF3P48412 PAU15YIR041W 375 nt8.26□□□□□ -1.09
UPF3P48412 SFL1YOR140W 2301 nt8.26□□□□□ -1.09
UPF3P48412 POT1YIL160C 1254 nt8.25□□□□□ -1.09
UPF3P48412 CRC1YOR100C 984 nt8.25□□□□□ -1.09
UPF3P48412 ABZ2YMR289W 1125 nt8.24□□□□□ -1.09
UPF3P48412 NBA1YOL070C 1506 nt8.24□□□□□ -1.09
UPF3P48412 NIF3YGL221C 867 nt8.23□□□□□ -1.09
UPF3P48412 tE(CUC)DtE(CUC)D 72 nt8.22□□□□□ -1.09
UPF3P48412 tE(CUC)ItE(CUC)I 72 nt8.22□□□□□ -1.09
UPF3P48412 PCP1YGR101W 1041 nt8.22□□□□□ -1.09
UPF3P48412 ESS1YJR017C 513 nt8.22□□□□□ -1.09
UPF3P48412 AMF1YOR378W 1548 nt8.22□□□□□ -1.09
UPF3P48412 MET1YKR069W 1782 nt8.22□□□□□ -1.09
UPF3P48412 TUB4YLR212C 1422 nt8.21□□□□□ -1.09
UPF3P48412 YDR467CYDR467C 327 nt8.21□□□□□ -1.1
Retrieved 100 of 7,029 protein–RNA pairs in 13.3 ms