Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 YJR114WYJR114W 393 nt11.13□□□□□ -0.63
RTR1P40084 TVP23YDR084C 600 nt11.12□□□□□ -0.63
RTR1P40084 OPI3YJR073C 621 nt11.12□□□□□ -0.63
RTR1P40084 ENT4YLL038C 744 nt11.12□□□□□ -0.63
RTR1P40084 COQ8YGL119W 1506 nt11.12□□□□□ -0.63
RTR1P40084 YLR046CYLR046C 813 nt11.11□□□□□ -0.63
RTR1P40084 SEN2YLR105C 1134 nt11.11□□□□□ -0.63
RTR1P40084 KES1YPL145C 1305 nt11.09□□□□□ -0.63
RTR1P40084 ABZ2YMR289W 1125 nt11.07□□□□□ -0.64
RTR1P40084 GID8YMR135C 1368 nt11.04□□□□□ -0.64
RTR1P40084 PAR32YDL173W 888 nt11.04□□□□□ -0.64
RTR1P40084 DLD3YEL071W 1491 nt11.04□□□□□ -0.64
RTR1P40084 SGA1YIL099W 1650 nt11.04□□□□□ -0.64
RTR1P40084 ITR2YOL103W 1830 nt11.03□□□□□ -0.64
RTR1P40084 YJL064WYJL064W 396 nt11.02□□□□□ -0.65
RTR1P40084 YNR064CYNR064C 873 nt11.02□□□□□ -0.65
RTR1P40084 YHR219WYHR219W 1875 nt11□□□□□ -0.65
RTR1P40084 NAS2YIL007C 663 nt10.99□□□□□ -0.65
RTR1P40084 ELO1YJL196C 933 nt10.99□□□□□ -0.65
RTR1P40084 CDD1YLR245C 429 nt10.99□□□□□ -0.65
RTR1P40084 MRS6YOR370C 1812 nt10.99□□□□□ -0.65
RTR1P40084 ZAP1YJL056C 2643 nt10.99□□□□□ -0.65
RTR1P40084 NAP1YKR048C 1254 nt10.98□□□□□ -0.65
RTR1P40084 YKL133CYKL133C 1392 nt10.96□□□□□ -0.65
RTR1P40084 IGD1YFR017C 588 nt10.96□□□□□ -0.65
RTR1P40084 PAU19YMR325W 375 nt10.96□□□□□ -0.65
RTR1P40084 PUP1YOR157C 786 nt10.96□□□□□ -0.65
RTR1P40084 UGP1YKL035W 1500 nt10.95□□□□□ -0.66
RTR1P40084 HSL7YBR133C 2484 nt10.95□□□□□ -0.66
RTR1P40084 ENO2YHR174W 1314 nt10.95□□□□□ -0.66
RTR1P40084 LSR1LSR1 1175 nt10.95□□□□□ -0.66
RTR1P40084 AMF1YOR378W 1548 nt10.94□□□□□ -0.66
RTR1P40084 TPC1YGR096W 945 nt10.93□□□□□ -0.66
RTR1P40084 PCP1YGR101W 1041 nt10.93□□□□□ -0.66
RTR1P40084 KRE1YNL322C 942 nt10.93□□□□□ -0.66
RTR1P40084 KEL3YPL263C 1956 nt10.92□□□□□ -0.66
RTR1P40084 SFL1YOR140W 2301 nt10.91□□□□□ -0.66
RTR1P40084 SPE2YOL052C 1191 nt10.91□□□□□ -0.66
RTR1P40084 HIS2YFR025C 1008 nt10.9□□□□□ -0.66
RTR1P40084 SWT21YNL187W 1074 nt10.9□□□□□ -0.66
RTR1P40084 TIP1YBR067C 633 nt10.89□□□□□ -0.67
RTR1P40084 THP3YPR045C 1413 nt10.89□□□□□ -0.67
RTR1P40084 SUV3YPL029W 2214 nt10.89□□□□□ -0.67
RTR1P40084 VMA11YPL234C 495 nt10.88□□□□□ -0.67
RTR1P40084 YMR265CYMR265C 1386 nt10.85□□□□□ -0.67
RTR1P40084 MET1YKR069W 1782 nt10.84□□□□□ -0.67
RTR1P40084 RPD3YNL330C 1302 nt10.84□□□□□ -0.67
RTR1P40084 tA(AGC)DtA(AGC)D 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)FtA(AGC)F 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)GtA(AGC)G 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)HtA(AGC)H 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)JtA(AGC)J 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)K1tA(AGC)K1 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)K2tA(AGC)K2 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)LtA(AGC)L 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)M1tA(AGC)M1 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)M2tA(AGC)M2 73 nt10.83□□□□□ -0.68
RTR1P40084 tA(AGC)PtA(AGC)P 73 nt10.83□□□□□ -0.68
RTR1P40084 HAP5YOR358W 729 nt10.83□□□□□ -0.68
RTR1P40084 LEU2YCL018W 1095 nt10.83□□□□□ -0.68
RTR1P40084 FSH2YMR222C 672 nt10.82□□□□□ -0.68
RTR1P40084 PHB2YGR231C 933 nt10.81□□□□□ -0.68
RTR1P40084 YKL053WYKL053W 375 nt10.81□□□□□ -0.68
RTR1P40084 ADH3YMR083W 1128 nt10.81□□□□□ -0.68
RTR1P40084 CRC1YOR100C 984 nt10.81□□□□□ -0.68
RTR1P40084 SNX3YOR357C 489 nt10.81□□□□□ -0.68
RTR1P40084 IPL1YPL209C 1104 nt10.81□□□□□ -0.68
RTR1P40084 NAM8YHR086W 1572 nt10.81□□□□□ -0.68
RTR1P40084 SSL2YIL143C 2532 nt10.8□□□□□ -0.68
RTR1P40084 SLG1YOR008C 1137 nt10.8□□□□□ -0.68
RTR1P40084 RIM8YGL045W 1629 nt10.78□□□□□ -0.68
RTR1P40084 RPN14YGL004C 1254 nt10.77□□□□□ -0.69
RTR1P40084 snR31snR31 225 nt10.77□□□□□ -0.69
RTR1P40084 FLX1YIL134W 936 nt10.75□□□□□ -0.69
RTR1P40084 YKR012CYKR012C 378 nt10.75□□□□□ -0.69
RTR1P40084 ODC1YPL134C 933 nt10.75□□□□□ -0.69
RTR1P40084 CWP2YKL096W-A 279 nt10.74□□□□□ -0.69
RTR1P40084 YGL114WYGL114W 2178 nt10.74□□□□□ -0.69
RTR1P40084 RIM2YBR192W 1134 nt10.73□□□□□ -0.69
RTR1P40084 YCR025CYCR025C 411 nt10.72□□□□□ -0.69
RTR1P40084 MOB1YIL106W 945 nt10.72□□□□□ -0.69
RTR1P40084 TIM44YIL022W 1296 nt10.71□□□□□ -0.69
RTR1P40084 REX2YLR059C 810 nt10.71□□□□□ -0.69
RTR1P40084 SDS24YBR214W 1584 nt10.71□□□□□ -0.69
RTR1P40084 SAN1YDR143C 1833 nt10.7□□□□□ -0.7
RTR1P40084 KGD2YDR148C 1392 nt10.69□□□□□ -0.7
RTR1P40084 SRP54YPR088C 1626 nt10.69□□□□□ -0.7
RTR1P40084 RPC31YNL151C 756 nt10.68□□□□□ -0.7
RTR1P40084 ACO2YJL200C 2370 nt10.67□□□□□ -0.7
RTR1P40084 VBA3YCL069W 1377 nt10.65□□□□□ -0.7
RTR1P40084 DPL1YDR294C 1770 nt10.65□□□□□ -0.7
RTR1P40084 YMR209CYMR209C 1374 nt10.65□□□□□ -0.71
RTR1P40084 KRR1YCL059C 951 nt10.63□□□□□ -0.71
RTR1P40084 LYS20YDL182W 1287 nt10.63□□□□□ -0.71
RTR1P40084 CYC3YAL039C 810 nt10.62□□□□□ -0.71
RTR1P40084 SAM50YNL026W 1455 nt10.61□□□□□ -0.71
RTR1P40084 ENO1YGR254W 1314 nt10.61□□□□□ -0.71
RTR1P40084 MDM35YKL053C-A 261 nt10.61□□□□□ -0.71
RTR1P40084 YCP4YCR004C 744 nt10.59□□□□□ -0.71
RTR1P40084 SER2YGR208W 930 nt10.59□□□□□ -0.71
Retrieved 100 of 7,029 protein–RNA pairs in 60.4 ms