Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 DUX4L24-201ENST00000617576 1269 ntBASIC25.3■■□□□ 1.64
CCDC187A0A096LP49 DUX4L22-201ENST00000618238 1269 ntBASIC25.3■■□□□ 1.64
CCDC187A0A096LP49 DUX4L20-201ENST00000619712 1269 ntBASIC25.3■■□□□ 1.64
CCDC187A0A096LP49 DUX4L21-201ENST00000622058 1269 ntBASIC25.3■■□□□ 1.64
CCDC187A0A096LP49 DUX4L10-201ENST00000622460 1267 ntBASIC25.3■■□□□ 1.64
CCDC187A0A096LP49 DUX4L25-201ENST00000624915 1269 ntBASIC25.3■■□□□ 1.64
CCDC187A0A096LP49 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.29■■□□□ 1.64
CCDC187A0A096LP49 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.29■■□□□ 1.64
CCDC187A0A096LP49 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC187A0A096LP49 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC187A0A096LP49 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
CCDC187A0A096LP49 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC187A0A096LP49 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.27■■□□□ 1.64
CCDC187A0A096LP49 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC187A0A096LP49 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC187A0A096LP49 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.25■■□□□ 1.63
CCDC187A0A096LP49 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.25■■□□□ 1.63
CCDC187A0A096LP49 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.25■■□□□ 1.63
CCDC187A0A096LP49 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC187A0A096LP49 AC120057.4-201ENST00000624722 1615 ntBASIC25.24■■□□□ 1.63
CCDC187A0A096LP49 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC187A0A096LP49 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC187A0A096LP49 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC187A0A096LP49 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
CCDC187A0A096LP49 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC187A0A096LP49 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.23■■□□□ 1.63
CCDC187A0A096LP49 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC187A0A096LP49 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC187A0A096LP49 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC187A0A096LP49 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.22■■□□□ 1.63
CCDC187A0A096LP49 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC187A0A096LP49 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC187A0A096LP49 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CCDC187A0A096LP49 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CCDC187A0A096LP49 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.2■■□□□ 1.62
CCDC187A0A096LP49 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.2■■□□□ 1.62
CCDC187A0A096LP49 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC187A0A096LP49 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC187A0A096LP49 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC187A0A096LP49 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC187A0A096LP49 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC187A0A096LP49 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC187A0A096LP49 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC187A0A096LP49 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.15■■□□□ 1.62
CCDC187A0A096LP49 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
CCDC187A0A096LP49 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
CCDC187A0A096LP49 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CCDC187A0A096LP49 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.12■■□□□ 1.61
CCDC187A0A096LP49 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CCDC187A0A096LP49 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.11■■□□□ 1.61
CCDC187A0A096LP49 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.11■■□□□ 1.61
CCDC187A0A096LP49 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.1■■□□□ 1.61
CCDC187A0A096LP49 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.1■■□□□ 1.61
CCDC187A0A096LP49 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.1■■□□□ 1.61
CCDC187A0A096LP49 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CCDC187A0A096LP49 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
CCDC187A0A096LP49 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC187A0A096LP49 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
CCDC187A0A096LP49 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CCDC187A0A096LP49 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CCDC187A0A096LP49 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CCDC187A0A096LP49 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.05■■□□□ 1.6
CCDC187A0A096LP49 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CCDC187A0A096LP49 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.04■■□□□ 1.6
CCDC187A0A096LP49 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC187A0A096LP49 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CCDC187A0A096LP49 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.03■■□□□ 1.6
CCDC187A0A096LP49 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC187A0A096LP49 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.03■■□□□ 1.6
CCDC187A0A096LP49 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC187A0A096LP49 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
CCDC187A0A096LP49 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC187A0A096LP49 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC187A0A096LP49 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
CCDC187A0A096LP49 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CCDC187A0A096LP49 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.01■■□□□ 1.59
CCDC187A0A096LP49 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CCDC187A0A096LP49 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC187A0A096LP49 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC25■■□□□ 1.59
CCDC187A0A096LP49 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC187A0A096LP49 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC24.99■■□□□ 1.59
CCDC187A0A096LP49 LINC00273-201ENST00000539813 1452 ntBASIC24.98■■□□□ 1.59
CCDC187A0A096LP49 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms