Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCDHGA3Q9Y5H0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
PCDHGA3Q9Y5H0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
PCDHGA3Q9Y5H0 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.85■□□□□ 0.77
PCDHGA3Q9Y5H0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 GCSHP5-201ENST00000443090 522 ntBASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 AP006294.2-201ENST00000641667 209 ntBASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 FAM99A-202ENST00000538190 1989 ntBASIC19.84■□□□□ 0.77
PCDHGA3Q9Y5H0 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 AC091799.1-201ENST00000422823 811 ntBASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 RPS2P52-201ENST00000469610 820 ntBASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 UNC93B5-201ENST00000530315 699 ntBASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.83■□□□□ 0.77
PCDHGA3Q9Y5H0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA3Q9Y5H0 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA3Q9Y5H0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA3Q9Y5H0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.83■□□□□ 0.76
PCDHGA3Q9Y5H0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.83■□□□□ 0.76
PCDHGA3Q9Y5H0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA3Q9Y5H0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
PCDHGA3Q9Y5H0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 AC245052.3-201ENST00000450182 901 ntBASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 CDV3P1-201ENST00000471403 739 ntBASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 AC006058.3-201ENST00000606217 1069 ntBASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA3Q9Y5H0 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 AC026366.1-201ENST00000488803 879 ntBASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA3Q9Y5H0 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 AC010542.4-201ENST00000563151 1910 ntBASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA3Q9Y5H0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms