Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHGA4Q9Y5G9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHGA4Q9Y5G9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PCDHGA4Q9Y5G9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
PCDHGA4Q9Y5G9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.12■□□□□ 0.81
PCDHGA4Q9Y5G9 AC026471.1-201ENST00000564629 3026 ntBASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 AC120057.1-201ENST00000483947 663 ntBASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 ITM2C-210ENST00000620962 501 ntBASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 AC061975.6-201ENST00000579045 1553 ntBASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
PCDHGA4Q9Y5G9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 KRT18P20-201ENST00000548986 1279 ntBASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 MIR4758-201ENST00000577688 71 ntBASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PCDHGA4Q9Y5G9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 KRT18P29-201ENST00000397031 1267 ntBASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 RNA5SP413-201ENST00000516373 109 ntBASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
PCDHGA4Q9Y5G9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 AC244517.3-201ENST00000616254 1235 ntBASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 AC013268.1-206ENST00000638368 961 ntBASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 AC112229.1-201ENST00000639295 961 ntBASIC20.08■□□□□ 0.81
PCDHGA4Q9Y5G9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
PCDHGA4Q9Y5G9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.08■□□□□ 0.8
PCDHGA4Q9Y5G9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PCDHGA4Q9Y5G9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.08■□□□□ 0.8
PCDHGA4Q9Y5G9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.07■□□□□ 0.8
PCDHGA4Q9Y5G9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PCDHGA4Q9Y5G9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms