Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 PGM5P4-201ENST00000421970 445 ntBASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
VPS9D1Q9Y2B5 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
VPS9D1Q9Y2B5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.33■□□□□ 0.84
VPS9D1Q9Y2B5 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS9D1Q9Y2B5 LINC01006-201ENST00000333319 2292 ntBASIC20.33■□□□□ 0.84
VPS9D1Q9Y2B5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS9D1Q9Y2B5 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS9D1Q9Y2B5 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.33■□□□□ 0.84
VPS9D1Q9Y2B5 AC073314.1-201ENST00000568729 2216 ntBASIC20.33■□□□□ 0.84
VPS9D1Q9Y2B5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS9D1Q9Y2B5 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 AC092720.2-201ENST00000602388 1665 ntBASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
VPS9D1Q9Y2B5 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS9D1Q9Y2B5 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS9D1Q9Y2B5 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 AC006015.1-201ENST00000429970 570 ntBASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS9D1Q9Y2B5 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms