Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 AC007322.3-201ENST00000426526 701 ntBASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 MYCNOS-205ENST00000641950 531 ntBASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 AC092720.2-201ENST00000602388 1665 ntBASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS29Q9UBQ0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 AC087623.3-201ENST00000607047 1098 ntBASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS29Q9UBQ0 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS29Q9UBQ0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 AL512408.1-201ENST00000569378 2000 ntBASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 AL162377.1-201ENST00000618844 1793 ntBASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS29Q9UBQ0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 CDV3P1-201ENST00000471403 739 ntBASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
VPS29Q9UBQ0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS29Q9UBQ0 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS29Q9UBQ0 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms