Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
DDX4Q9NQI0 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 AC006557.6-201ENST00000623071 864 ntBASIC24.3■■□□□ 1.48
DDX4Q9NQI0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
DDX4Q9NQI0 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 AC011484.1-201ENST00000377652 1995 ntBASIC24.29■■□□□ 1.48
DDX4Q9NQI0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 ARL16-209ENST00000573715 763 ntTSL 3 BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 ARL16-211ENST00000576135 694 ntTSL 3 BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 BRWD1-AS2-201ENST00000603064 1028 ntBASIC24.29■■□□□ 1.48
DDX4Q9NQI0 FAM197Y4-202ENST00000622692 608 ntBASIC24.29■■□□□ 1.48
DDX4Q9NQI0 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 MOK-233ENST00000524214 1539 ntTSL 2 BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
DDX4Q9NQI0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 PGM5P4-201ENST00000421970 445 ntBASIC24.28■■□□□ 1.48
DDX4Q9NQI0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 AC005829.2-201ENST00000571422 1056 ntBASIC24.28■■□□□ 1.48
DDX4Q9NQI0 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
DDX4Q9NQI0 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
DDX4Q9NQI0 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 THEM4-205ENST00000489410 643 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 SPIB-206ENST00000596074 847 ntTSL 2 BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 Z99916.2-201ENST00000604037 246 ntBASIC24.26■■□□□ 1.47
DDX4Q9NQI0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
DDX4Q9NQI0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 AL024507.2-201ENST00000606070 2574 ntBASIC24.25■■□□□ 1.47
DDX4Q9NQI0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 MTDHP1-201ENST00000605323 784 ntBASIC24.25■■□□□ 1.47
DDX4Q9NQI0 AC120498.8-201ENST00000614275 531 ntBASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms