Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIME1Q9H400 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.97■□□□□ 0.47
LIME1Q9H400 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.97■□□□□ 0.47
LIME1Q9H400 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIME1Q9H400 POU5F1P4-201ENST00000413175 1085 ntBASIC17.97■□□□□ 0.47
LIME1Q9H400 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.97■□□□□ 0.47
LIME1Q9H400 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIME1Q9H400 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.97■□□□□ 0.47
LIME1Q9H400 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
LIME1Q9H400 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.97■□□□□ 0.47
LIME1Q9H400 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIME1Q9H400 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIME1Q9H400 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIME1Q9H400 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.97■□□□□ 0.47
LIME1Q9H400 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 AC061975.6-201ENST00000579045 1553 ntBASIC17.96■□□□□ 0.47
LIME1Q9H400 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LIME1Q9H400 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
LIME1Q9H400 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
LIME1Q9H400 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.96■□□□□ 0.47
LIME1Q9H400 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.96■□□□□ 0.47
LIME1Q9H400 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.96■□□□□ 0.47
LIME1Q9H400 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIME1Q9H400 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
LIME1Q9H400 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.95■□□□□ 0.46
LIME1Q9H400 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIME1Q9H400 AL157384.1-201ENST00000445995 2473 ntBASIC17.95■□□□□ 0.46
LIME1Q9H400 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.95■□□□□ 0.46
LIME1Q9H400 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIME1Q9H400 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIME1Q9H400 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.95■□□□□ 0.46
LIME1Q9H400 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIME1Q9H400 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.95■□□□□ 0.46
LIME1Q9H400 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIME1Q9H400 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.95■□□□□ 0.46
LIME1Q9H400 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.95■□□□□ 0.46
LIME1Q9H400 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.95■□□□□ 0.46
LIME1Q9H400 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.95■□□□□ 0.46
LIME1Q9H400 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.95■□□□□ 0.46
LIME1Q9H400 FAM197Y4-202ENST00000622692 608 ntBASIC17.95■□□□□ 0.46
LIME1Q9H400 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.95■□□□□ 0.46
LIME1Q9H400 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LIME1Q9H400 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.95■□□□□ 0.46
LIME1Q9H400 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.95■□□□□ 0.46
LIME1Q9H400 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.95■□□□□ 0.46
LIME1Q9H400 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC17.95■□□□□ 0.46
LIME1Q9H400 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
LIME1Q9H400 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
LIME1Q9H400 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LIME1Q9H400 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.94■□□□□ 0.46
LIME1Q9H400 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.94■□□□□ 0.46
LIME1Q9H400 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.94■□□□□ 0.46
LIME1Q9H400 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 MIR1224-201ENST00000408193 85 ntBASIC17.94■□□□□ 0.46
LIME1Q9H400 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.94■□□□□ 0.46
LIME1Q9H400 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.94■□□□□ 0.46
LIME1Q9H400 RPPH1-201ENST00000516869 333 ntBASIC17.94■□□□□ 0.46
LIME1Q9H400 C1QBPP2-201ENST00000528754 825 ntBASIC17.94■□□□□ 0.46
LIME1Q9H400 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
LIME1Q9H400 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.94■□□□□ 0.46
LIME1Q9H400 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.94■□□□□ 0.46
LIME1Q9H400 KRT16P2-201ENST00000414673 1423 ntBASIC17.94■□□□□ 0.46
LIME1Q9H400 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
LIME1Q9H400 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LIME1Q9H400 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.94■□□□□ 0.46
LIME1Q9H400 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LIME1Q9H400 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LIME1Q9H400 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.93■□□□□ 0.46
LIME1Q9H400 MIR4497-201ENST00000583208 89 ntBASIC17.93■□□□□ 0.46
LIME1Q9H400 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.93■□□□□ 0.46
LIME1Q9H400 Z99916.2-201ENST00000604037 246 ntBASIC17.93■□□□□ 0.46
LIME1Q9H400 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.93■□□□□ 0.46
LIME1Q9H400 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.93■□□□□ 0.46
LIME1Q9H400 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.93■□□□□ 0.46
LIME1Q9H400 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LIME1Q9H400 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIME1Q9H400 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms