Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC018445.3-201ENST00000624177 1945 ntBASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 AC010141.3-201ENST00000456659 717 ntBASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 AC138932.1-201ENST00000534164 6830 ntBASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 AC097381.1-201ENST00000429019 1296 ntBASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 pRNA.6-201ENST00000610482 90 ntBASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 pRNA.5-201ENST00000612139 90 ntBASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 AC092666.2-201ENST00000613287 246 ntBASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 pRNA.11-201ENST00000618423 90 ntBASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 pRNA.13-201ENST00000619112 90 ntBASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ZNF540Q8NDQ6 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 AC006455.2-201ENST00000429931 906 ntBASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
ZNF540Q8NDQ6 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 FP700111.2-201ENST00000619190 1892 ntBASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.85■□□□□ 0.61
ZNF540Q8NDQ6 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.84■□□□□ 0.61
ZNF540Q8NDQ6 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms