Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 SPCS2P3-201ENST00000500401 656 ntBASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 AC087393.1-201ENST00000582896 145 ntBASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28AQ8IWP9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 TNRC18P3-201ENST00000441896 2691 ntBASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 KRT18P60-201ENST00000312876 1297 ntBASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 BHLHE23-202ENST00000612929 1109 ntBASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 AL353803.4-201ENST00000565882 1934 ntBASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 AC139713.2-201ENST00000641328 2723 ntBASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28AQ8IWP9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28AQ8IWP9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 PRORSD1P-202ENST00000563365 2154 ntBASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28AQ8IWP9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms