Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 AC097381.1-201ENST00000429019 1296 ntBASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 NTF6G-201ENST00000591094 616 ntBASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDKL3Q8IVW4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CDKL3Q8IVW4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CDKL3Q8IVW4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
CDKL3Q8IVW4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
CDKL3Q8IVW4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 SLC25A24-204ENST00000569674 2357 ntBASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CDKL3Q8IVW4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 MIR6821-201ENST00000617625 74 ntBASIC21■□□□□ 0.95
CDKL3Q8IVW4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21■□□□□ 0.95
CDKL3Q8IVW4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CDKL3Q8IVW4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 CDV3P1-201ENST00000471403 739 ntBASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CDKL3Q8IVW4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CDKL3Q8IVW4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms