Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDB1Q86U70 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
LDB1Q86U70 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB1Q86U70 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDB1Q86U70 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB1Q86U70 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
LDB1Q86U70 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LDB1Q86U70 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB1Q86U70 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.43■□□□□ 0.86
LDB1Q86U70 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LDB1Q86U70 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 PCDHAC2-203ENST00000615316 3011 ntBASIC20.42■□□□□ 0.86
LDB1Q86U70 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.42■□□□□ 0.86
LDB1Q86U70 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.42■□□□□ 0.86
LDB1Q86U70 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 AC007322.3-201ENST00000426526 701 ntBASIC20.42■□□□□ 0.86
LDB1Q86U70 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
LDB1Q86U70 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
LDB1Q86U70 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
LDB1Q86U70 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
LDB1Q86U70 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.42■□□□□ 0.86
LDB1Q86U70 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
LDB1Q86U70 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LDB1Q86U70 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.41■□□□□ 0.86
LDB1Q86U70 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.41■□□□□ 0.86
LDB1Q86U70 GABARAPL3-202ENST00000624044 1851 ntBASIC20.41■□□□□ 0.86
LDB1Q86U70 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.41■□□□□ 0.86
LDB1Q86U70 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
LDB1Q86U70 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
LDB1Q86U70 AC006015.1-201ENST00000429970 570 ntBASIC20.41■□□□□ 0.86
LDB1Q86U70 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
LDB1Q86U70 AC022517.1-201ENST00000592429 346 ntBASIC20.41■□□□□ 0.86
LDB1Q86U70 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
LDB1Q86U70 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
LDB1Q86U70 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
LDB1Q86U70 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LDB1Q86U70 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LDB1Q86U70 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
LDB1Q86U70 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB1Q86U70 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB1Q86U70 KRT18P11-201ENST00000435214 1283 ntBASIC20.4■□□□□ 0.86
LDB1Q86U70 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.4■□□□□ 0.86
LDB1Q86U70 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB1Q86U70 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB1Q86U70 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB1Q86U70 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.4■□□□□ 0.86
LDB1Q86U70 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.4■□□□□ 0.86
LDB1Q86U70 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.4■□□□□ 0.86
LDB1Q86U70 AC020907.5-201ENST00000624372 1936 ntBASIC20.4■□□□□ 0.86
LDB1Q86U70 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB1Q86U70 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LDB1Q86U70 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
LDB1Q86U70 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.39■□□□□ 0.85
LDB1Q86U70 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LDB1Q86U70 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LDB1Q86U70 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB1Q86U70 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB1Q86U70 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LDB1Q86U70 IKBKGP1-201ENST00000612193 1073 ntBASIC20.39■□□□□ 0.85
LDB1Q86U70 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB1Q86U70 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.39■□□□□ 0.85
LDB1Q86U70 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB1Q86U70 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.39■□□□□ 0.85
LDB1Q86U70 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB1Q86U70 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
LDB1Q86U70 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB1Q86U70 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB1Q86U70 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
LDB1Q86U70 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB1Q86U70 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
LDB1Q86U70 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB1Q86U70 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
LDB1Q86U70 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB1Q86U70 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB1Q86U70 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms