Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 COX10-202ENST00000429152 875 ntTSL 2 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
UBR4Q5T4S7 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 AC079776.4-201ENST00000511039 504 ntBASIC11.34□□□□□ -0.59
UBR4Q5T4S7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 TSPY14P-201ENST00000303979 915 ntBASIC11.34□□□□□ -0.59
UBR4Q5T4S7 MIR1233-2-201ENST00000408138 82 ntBASIC11.34□□□□□ -0.59
UBR4Q5T4S7 MIR1233-1-201ENST00000408722 82 ntBASIC11.34□□□□□ -0.59
UBR4Q5T4S7 FAAHP1-202ENST00000446499 1238 ntBASIC11.34□□□□□ -0.59
UBR4Q5T4S7 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 EI24-213ENST00000618552 1747 ntTSL 5 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC11.34□□□□□ -0.59
UBR4Q5T4S7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
UBR4Q5T4S7 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.59
UBR4Q5T4S7 AC061975.6-201ENST00000579045 1553 ntBASIC11.33□□□□□ -0.59
UBR4Q5T4S7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 EGLN1P1-201ENST00000531623 762 ntBASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AC120114.3-201ENST00000611923 658 ntBASIC11.33□□□□□ -0.6
UBR4Q5T4S7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 PARP8-218ENST00000513738 596 ntTSL 4 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AC004264.1-201ENST00000608354 794 ntBASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AC243732.1-201ENST00000612648 864 ntBASIC11.33□□□□□ -0.6
UBR4Q5T4S7 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC11.33□□□□□ -0.6
UBR4Q5T4S7 COX11P1-201ENST00000489116 835 ntBASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AL732292.2-201ENST00000609649 430 ntBASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AP004607.7-201ENST00000527152 1677 ntBASIC11.33□□□□□ -0.6
UBR4Q5T4S7 AC079630.1-202ENST00000618127 1840 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 TEX30-205ENST00000376029 959 ntTSL 2 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 IGHV3-22-201ENST00000520721 359 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 AC120498.10-201ENST00000621827 505 ntBASIC11.32□□□□□ -0.6
UBR4Q5T4S7 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
UBR4Q5T4S7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms