Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 AL121832.2-201ENST00000610979 668 ntBASIC20■□□□□ 0.79
PTCHD3Q3KNS1 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD3Q3KNS1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 FP700111.2-201ENST00000619190 1892 ntBASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
PTCHD3Q3KNS1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD3Q3KNS1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 TERF1P5-201ENST00000477545 1207 ntBASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
PTCHD3Q3KNS1 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 AC027702.1-201ENST00000563810 1770 ntBASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 AC013268.1-206ENST00000638368 961 ntBASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 AC112229.1-201ENST00000639295 961 ntBASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 AC073314.1-201ENST00000568729 2216 ntBASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 LINC01006-201ENST00000333319 2292 ntBASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD3Q3KNS1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 TSPY6P-201ENST00000448518 926 ntBASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
PTCHD3Q3KNS1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 AC007322.3-201ENST00000426526 701 ntBASIC19.94■□□□□ 0.78
PTCHD3Q3KNS1 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms