Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC15.01□□□□□ -0.01
PRKDCP78527 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC15.01□□□□□ -0.01
PRKDCP78527 AC116562.2-201ENST00000507042 360 ntBASIC15.01□□□□□ -0.01
PRKDCP78527 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.01□□□□□ -0.01
PRKDCP78527 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.01□□□□□ -0.01
PRKDCP78527 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC15.01□□□□□ -0.01
PRKDCP78527 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PRKDCP78527 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 EED-207ENST00000528180 1745 ntTSL 5 BASIC15.01□□□□□ -0.01
PRKDCP78527 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 CDV3P1-201ENST00000471403 739 ntBASIC15□□□□□ -0.01
PRKDCP78527 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC15□□□□□ -0.01
PRKDCP78527 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
PRKDCP78527 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC15□□□□□ -0.01
PRKDCP78527 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 SLC25A1P4-201ENST00000567977 778 ntBASIC15□□□□□ -0.01
PRKDCP78527 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PRKDCP78527 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PRKDCP78527 CD81-212ENST00000526072 1172 ntTSL 5 BASIC15□□□□□ -0.01
PRKDCP78527 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15□□□□□ -0.01
PRKDCP78527 AC093458.2-201ENST00000623150 629 ntBASIC15□□□□□ -0.01
PRKDCP78527 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15□□□□□ -0.01
PRKDCP78527 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC14.99□□□□□ -0.01
PRKDCP78527 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
PRKDCP78527 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC14.99□□□□□ -0.01
PRKDCP78527 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC14.99□□□□□ -0.01
PRKDCP78527 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC14.99□□□□□ -0.01
PRKDCP78527 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PRKDCP78527 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 AC117947.1-201ENST00000427448 529 ntBASIC14.99□□□□□ -0.01
PRKDCP78527 AL359075.1-203ENST00000462729 1002 ntBASIC14.99□□□□□ -0.01
PRKDCP78527 ECEL1P2-202ENST00000465689 757 ntBASIC14.99□□□□□ -0.01
PRKDCP78527 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.99□□□□□ -0.01
PRKDCP78527 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.99□□□□□ -0.01
PRKDCP78527 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PRKDCP78527 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC14.98□□□□□ -0.01
PRKDCP78527 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.98□□□□□ -0.01
PRKDCP78527 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.98□□□□□ -0.01
PRKDCP78527 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC14.98□□□□□ -0.01
PRKDCP78527 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 NBPF21P-201ENST00000425093 1451 ntBASIC14.98□□□□□ -0.01
PRKDCP78527 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.98□□□□□ -0.01
PRKDCP78527 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PRKDCP78527 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PRKDCP78527 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
PRKDCP78527 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PRKDCP78527 AC007322.3-201ENST00000426526 701 ntBASIC14.97□□□□□ -0.01
PRKDCP78527 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.97□□□□□ -0.01
PRKDCP78527 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PRKDCP78527 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.97□□□□□ -0.01
PRKDCP78527 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC14.97□□□□□ -0.01
PRKDCP78527 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC14.97□□□□□ -0.01
PRKDCP78527 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PRKDCP78527 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PRKDCP78527 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC14.97□□□□□ -0.01
PRKDCP78527 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PRKDCP78527 ATP5G1P1-201ENST00000448724 379 ntBASIC14.97□□□□□ -0.01
PRKDCP78527 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
PRKDCP78527 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PRKDCP78527 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PRKDCP78527 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PRKDCP78527 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
PRKDCP78527 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
PRKDCP78527 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC14.97□□□□□ -0.01
PRKDCP78527 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC14.97□□□□□ -0.01
PRKDCP78527 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PRKDCP78527 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PRKDCP78527 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PRKDCP78527 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PRKDCP78527 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
PRKDCP78527 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC14.96□□□□□ -0.01
PRKDCP78527 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PRKDCP78527 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms