Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CX3CL1P78423 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CX3CL1P78423 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC16.44■□□□□ 0.22
CX3CL1P78423 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CX3CL1P78423 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CX3CL1P78423 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CX3CL1P78423 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.44■□□□□ 0.22
CX3CL1P78423 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.44■□□□□ 0.22
CX3CL1P78423 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.44■□□□□ 0.22
CX3CL1P78423 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC16.44■□□□□ 0.22
CX3CL1P78423 AC243732.1-201ENST00000612648 864 ntBASIC16.44■□□□□ 0.22
CX3CL1P78423 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.44■□□□□ 0.22
CX3CL1P78423 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.44■□□□□ 0.22
CX3CL1P78423 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CX3CL1P78423 AC121338.2-201ENST00000622535 1744 ntBASIC16.44■□□□□ 0.22
CX3CL1P78423 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.44■□□□□ 0.22
CX3CL1P78423 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CX3CL1P78423 RBM17P2-201ENST00000616397 1405 ntBASIC16.44■□□□□ 0.22
CX3CL1P78423 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CX3CL1P78423 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.43■□□□□ 0.22
CX3CL1P78423 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CX3CL1P78423 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CX3CL1P78423 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CX3CL1P78423 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CX3CL1P78423 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC16.43■□□□□ 0.22
CX3CL1P78423 AC006015.1-201ENST00000429970 570 ntBASIC16.43■□□□□ 0.22
CX3CL1P78423 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.43■□□□□ 0.22
CX3CL1P78423 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CX3CL1P78423 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CX3CL1P78423 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CX3CL1P78423 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.43■□□□□ 0.22
CX3CL1P78423 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CX3CL1P78423 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
CX3CL1P78423 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CX3CL1P78423 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CX3CL1P78423 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CX3CL1P78423 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CX3CL1P78423 ME3-201ENST00000323418 1068 ntTSL 5 BASIC16.42■□□□□ 0.22
CX3CL1P78423 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CX3CL1P78423 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CX3CL1P78423 AC010536.3-201ENST00000620306 533 ntBASIC16.42■□□□□ 0.22
CX3CL1P78423 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CX3CL1P78423 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CX3CL1P78423 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CX3CL1P78423 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CX3CL1P78423 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CX3CL1P78423 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CX3CL1P78423 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CX3CL1P78423 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
CX3CL1P78423 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC16.41■□□□□ 0.22
CX3CL1P78423 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.41■□□□□ 0.22
CX3CL1P78423 GLI3-203ENST00000437480 451 ntTSL 2 BASIC16.41■□□□□ 0.22
CX3CL1P78423 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.41■□□□□ 0.22
CX3CL1P78423 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CX3CL1P78423 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
CX3CL1P78423 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.41■□□□□ 0.22
CX3CL1P78423 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CX3CL1P78423 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.41■□□□□ 0.22
CX3CL1P78423 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CX3CL1P78423 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 PLK5-205ENST00000642079 1969 ntBASIC16.4■□□□□ 0.22
CX3CL1P78423 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.4■□□□□ 0.22
CX3CL1P78423 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CX3CL1P78423 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CX3CL1P78423 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.4■□□□□ 0.22
CX3CL1P78423 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CX3CL1P78423 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms