Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC22.58■■□□□ 1.2
PEX3P56589 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
PEX3P56589 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PEX3P56589 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PEX3P56589 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
PEX3P56589 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC22.58■■□□□ 1.2
PEX3P56589 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PEX3P56589 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PEX3P56589 AC087633.2-202ENST00000565166 1439 ntBASIC22.57■■□□□ 1.2
PEX3P56589 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC22.57■■□□□ 1.2
PEX3P56589 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC22.57■■□□□ 1.2
PEX3P56589 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
PEX3P56589 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC22.57■■□□□ 1.2
PEX3P56589 LSM12P1-201ENST00000411836 588 ntBASIC22.57■■□□□ 1.2
PEX3P56589 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC22.57■■□□□ 1.2
PEX3P56589 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC22.57■■□□□ 1.2
PEX3P56589 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC22.57■■□□□ 1.2
PEX3P56589 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PEX3P56589 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.57■■□□□ 1.2
PEX3P56589 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
PEX3P56589 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
PEX3P56589 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.56■■□□□ 1.2
PEX3P56589 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC22.56■■□□□ 1.2
PEX3P56589 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PEX3P56589 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
PEX3P56589 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.56■■□□□ 1.2
PEX3P56589 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.56■■□□□ 1.2
PEX3P56589 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
PEX3P56589 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.56■■□□□ 1.2
PEX3P56589 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC22.56■■□□□ 1.2
PEX3P56589 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
PEX3P56589 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
PEX3P56589 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.56■■□□□ 1.2
PEX3P56589 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PEX3P56589 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PEX3P56589 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PEX3P56589 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.55■■□□□ 1.2
PEX3P56589 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PEX3P56589 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
PEX3P56589 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.55■■□□□ 1.2
PEX3P56589 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PEX3P56589 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.55■■□□□ 1.2
PEX3P56589 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.55■■□□□ 1.2
PEX3P56589 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.55■■□□□ 1.2
PEX3P56589 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.55■■□□□ 1.2
PEX3P56589 MIR4758-201ENST00000577688 71 ntBASIC22.55■■□□□ 1.2
PEX3P56589 MIR2861-201ENST00000636310 90 ntBASIC22.55■■□□□ 1.2
PEX3P56589 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
PEX3P56589 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.55■■□□□ 1.2
PEX3P56589 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC22.55■■□□□ 1.2
PEX3P56589 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
PEX3P56589 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
PEX3P56589 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC22.54■■□□□ 1.2
PEX3P56589 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.54■■□□□ 1.2
PEX3P56589 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.54■■□□□ 1.2
PEX3P56589 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 AC092118.2-201ENST00000613495 667 ntBASIC22.54■■□□□ 1.2
PEX3P56589 AL356652.1-201ENST00000615962 565 ntBASIC22.54■■□□□ 1.2
PEX3P56589 AL589743.5-201ENST00000616611 1050 ntBASIC22.54■■□□□ 1.2
PEX3P56589 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
PEX3P56589 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PEX3P56589 FP700111.2-201ENST00000619190 1892 ntBASIC22.54■■□□□ 1.2
PEX3P56589 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
PEX3P56589 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.53■■□□□ 1.2
PEX3P56589 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PEX3P56589 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.53■■□□□ 1.2
PEX3P56589 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
PEX3P56589 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PEX3P56589 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.2
PEX3P56589 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
PEX3P56589 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PEX3P56589 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
PEX3P56589 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
PEX3P56589 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC22.53■■□□□ 1.2
PEX3P56589 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC22.53■■□□□ 1.2
PEX3P56589 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
PEX3P56589 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC22.53■■□□□ 1.2
PEX3P56589 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PEX3P56589 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PEX3P56589 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
PEX3P56589 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
PEX3P56589 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
PEX3P56589 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
PEX3P56589 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC22.52■■□□□ 1.2
PEX3P56589 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
PEX3P56589 PGM5P4-201ENST00000421970 445 ntBASIC22.52■■□□□ 1.2
PEX3P56589 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC22.52■■□□□ 1.2
PEX3P56589 AC069152.1-201ENST00000438030 544 ntBASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms