Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTCFP49711 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTCFP49711 COPE-203ENST00000351079 907 ntTSL 2 BASIC23.86■■□□□ 1.41
CTCFP49711 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTCFP49711 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTCFP49711 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.86■■□□□ 1.41
CTCFP49711 AC022616.7-201ENST00000525383 220 ntBASIC23.86■■□□□ 1.41
CTCFP49711 FITM1-202ENST00000559294 800 ntBASIC23.86■■□□□ 1.41
CTCFP49711 CLN6-221ENST00000637494 765 ntTSL 5 BASIC23.86■■□□□ 1.41
CTCFP49711 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.86■■□□□ 1.41
CTCFP49711 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
CTCFP49711 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
CTCFP49711 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CTCFP49711 AC027702.1-201ENST00000563810 1770 ntBASIC23.86■■□□□ 1.41
CTCFP49711 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTCFP49711 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTCFP49711 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTCFP49711 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
CTCFP49711 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTCFP49711 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTCFP49711 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTCFP49711 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC23.85■■□□□ 1.41
CTCFP49711 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.85■■□□□ 1.41
CTCFP49711 AL691432.3-201ENST00000621860 400 ntBASIC23.85■■□□□ 1.41
CTCFP49711 LGALS8-AS1-201ENST00000487567 1457 ntBASIC23.85■■□□□ 1.41
CTCFP49711 MED25-212ENST00000618715 1467 ntTSL 5 BASIC23.85■■□□□ 1.41
CTCFP49711 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTCFP49711 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.85■■□□□ 1.41
CTCFP49711 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CTCFP49711 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CTCFP49711 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
CTCFP49711 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTCFP49711 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
CTCFP49711 AL390955.1-201ENST00000428694 934 ntBASIC23.84■■□□□ 1.41
CTCFP49711 AP000550.4-202ENST00000639755 178 ntBASIC23.84■■□□□ 1.41
CTCFP49711 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CTCFP49711 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CTCFP49711 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CTCFP49711 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.83■■□□□ 1.41
CTCFP49711 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTCFP49711 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTCFP49711 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CTCFP49711 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC23.83■■□□□ 1.41
CTCFP49711 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC23.83■■□□□ 1.41
CTCFP49711 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CTCFP49711 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
CTCFP49711 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.83■■□□□ 1.41
CTCFP49711 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
CTCFP49711 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CTCFP49711 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTCFP49711 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTCFP49711 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTCFP49711 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTCFP49711 AK4P3-201ENST00000418260 669 ntBASIC23.82■■□□□ 1.4
CTCFP49711 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.82■■□□□ 1.4
CTCFP49711 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC23.82■■□□□ 1.4
CTCFP49711 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.82■■□□□ 1.4
CTCFP49711 AC005829.2-201ENST00000571422 1056 ntBASIC23.82■■□□□ 1.4
CTCFP49711 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC23.82■■□□□ 1.4
CTCFP49711 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC23.82■■□□□ 1.4
CTCFP49711 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CTCFP49711 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC23.82■■□□□ 1.4
CTCFP49711 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CTCFP49711 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC23.81■■□□□ 1.4
CTCFP49711 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CTCFP49711 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CTCFP49711 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTCFP49711 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CTCFP49711 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CTCFP49711 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
CTCFP49711 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC23.81■■□□□ 1.4
CTCFP49711 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CTCFP49711 AC245052.3-201ENST00000450182 901 ntBASIC23.81■■□□□ 1.4
CTCFP49711 KRT16P5-201ENST00000455284 522 ntBASIC23.81■■□□□ 1.4
CTCFP49711 AC063952.2-201ENST00000498792 1227 ntBASIC23.81■■□□□ 1.4
CTCFP49711 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.81■■□□□ 1.4
CTCFP49711 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC23.81■■□□□ 1.4
CTCFP49711 DBP-204ENST00000599385 709 ntTSL 3 BASIC23.81■■□□□ 1.4
CTCFP49711 AC006538.3-201ENST00000612495 578 ntBASIC23.81■■□□□ 1.4
CTCFP49711 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC23.81■■□□□ 1.4
CTCFP49711 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.81■■□□□ 1.4
CTCFP49711 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC23.81■■□□□ 1.4
CTCFP49711 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CTCFP49711 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CTCFP49711 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CTCFP49711 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CTCFP49711 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CTCFP49711 AP000593.1-201ENST00000393668 712 ntBASIC23.8■■□□□ 1.4
CTCFP49711 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.8■■□□□ 1.4
CTCFP49711 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC23.8■■□□□ 1.4
CTCFP49711 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CTCFP49711 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC23.8■■□□□ 1.4
CTCFP49711 HES2-206ENST00000489730 730 ntTSL 2 BASIC23.8■■□□□ 1.4
CTCFP49711 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC23.8■■□□□ 1.4
CTCFP49711 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC23.8■■□□□ 1.4
CTCFP49711 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CTCFP49711 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC23.8■■□□□ 1.4
CTCFP49711 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CTCFP49711 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CTCFP49711 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms