Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC133681.1-201ENST00000465482 601 ntBASIC20.7■□□□□ 0.9
TNFRSF4P43489 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 AC006557.6-201ENST00000623071 864 ntBASIC20.7■□□□□ 0.9
TNFRSF4P43489 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
TNFRSF4P43489 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
TNFRSF4P43489 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
TNFRSF4P43489 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TNFRSF4P43489 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
TNFRSF4P43489 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
TNFRSF4P43489 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFRSF4P43489 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFRSF4P43489 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 AC124016.1-201ENST00000609552 612 ntBASIC20.67■□□□□ 0.9
TNFRSF4P43489 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFRSF4P43489 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFRSF4P43489 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFRSF4P43489 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TNFRSF4P43489 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFRSF4P43489 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
TNFRSF4P43489 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.66■□□□□ 0.9
TNFRSF4P43489 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFRSF4P43489 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFRSF4P43489 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.66■□□□□ 0.9
TNFRSF4P43489 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFRSF4P43489 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFRSF4P43489 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFRSF4P43489 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TNFRSF4P43489 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.66■□□□□ 0.9
TNFRSF4P43489 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.66■□□□□ 0.9
TNFRSF4P43489 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
TNFRSF4P43489 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
TNFRSF4P43489 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.66■□□□□ 0.9
TNFRSF4P43489 AL023875.1-201ENST00000640777 796 ntBASIC20.66■□□□□ 0.9
TNFRSF4P43489 AC244015.2-201ENST00000616358 1861 ntBASIC20.66■□□□□ 0.9
TNFRSF4P43489 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFRSF4P43489 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.65■□□□□ 0.9
TNFRSF4P43489 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
TNFRSF4P43489 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 AC012618.2-201ENST00000428058 849 ntBASIC20.65■□□□□ 0.9
TNFRSF4P43489 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TNFRSF4P43489 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms