Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHMT2P34897 AC105036.2-201ENST00000569468 176 ntBASIC20.02■□□□□ 0.8
SHMT2P34897 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.02■□□□□ 0.8
SHMT2P34897 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.02■□□□□ 0.8
SHMT2P34897 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.02■□□□□ 0.8
SHMT2P34897 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SHMT2P34897 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHMT2P34897 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHMT2P34897 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHMT2P34897 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.02■□□□□ 0.79
SHMT2P34897 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHMT2P34897 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SHMT2P34897 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHMT2P34897 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHMT2P34897 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
SHMT2P34897 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHMT2P34897 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SHMT2P34897 AL049796.1-201ENST00000565336 1766 ntBASIC20.01■□□□□ 0.79
SHMT2P34897 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.01■□□□□ 0.79
SHMT2P34897 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.01■□□□□ 0.79
SHMT2P34897 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.01■□□□□ 0.79
SHMT2P34897 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SHMT2P34897 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.01■□□□□ 0.79
SHMT2P34897 AL512625.2-201ENST00000417533 625 ntBASIC20.01■□□□□ 0.79
SHMT2P34897 AL109923.1-201ENST00000618799 583 ntBASIC20.01■□□□□ 0.79
SHMT2P34897 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHMT2P34897 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.01■□□□□ 0.79
SHMT2P34897 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SHMT2P34897 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHMT2P34897 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.01■□□□□ 0.79
SHMT2P34897 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHMT2P34897 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SHMT2P34897 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHMT2P34897 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SHMT2P34897 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
SHMT2P34897 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHMT2P34897 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHMT2P34897 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
SHMT2P34897 HLA-L-209ENST00000420110 1011 ntBASIC20■□□□□ 0.79
SHMT2P34897 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHMT2P34897 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20■□□□□ 0.79
SHMT2P34897 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20■□□□□ 0.79
SHMT2P34897 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHMT2P34897 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20■□□□□ 0.79
SHMT2P34897 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHMT2P34897 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
SHMT2P34897 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHMT2P34897 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SHMT2P34897 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.99■□□□□ 0.79
SHMT2P34897 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
SHMT2P34897 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.99■□□□□ 0.79
SHMT2P34897 SLC29A4P1-201ENST00000398760 971 ntBASIC19.99■□□□□ 0.79
SHMT2P34897 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.99■□□□□ 0.79
SHMT2P34897 AC104771.1-201ENST00000603335 964 ntBASIC19.99■□□□□ 0.79
SHMT2P34897 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.99■□□□□ 0.79
SHMT2P34897 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
SHMT2P34897 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
SHMT2P34897 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHMT2P34897 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
SHMT2P34897 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SHMT2P34897 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.98■□□□□ 0.79
SHMT2P34897 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
SHMT2P34897 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 TSPY6P-201ENST00000448518 926 ntBASIC19.98■□□□□ 0.79
SHMT2P34897 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
SHMT2P34897 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SHMT2P34897 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.98■□□□□ 0.79
SHMT2P34897 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.98■□□□□ 0.79
SHMT2P34897 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.98■□□□□ 0.79
SHMT2P34897 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SHMT2P34897 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
SHMT2P34897 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.98■□□□□ 0.79
SHMT2P34897 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.98■□□□□ 0.79
SHMT2P34897 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHMT2P34897 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.98■□□□□ 0.79
SHMT2P34897 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHMT2P34897 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHMT2P34897 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHMT2P34897 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHMT2P34897 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms