Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.93■□□□□ 0.46
COL8A1P27658 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.93■□□□□ 0.46
COL8A1P27658 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.93■□□□□ 0.46
COL8A1P27658 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
COL8A1P27658 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL8A1P27658 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL8A1P27658 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL8A1P27658 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL8A1P27658 LINC01568-207ENST00000641790 1380 ntBASIC17.92■□□□□ 0.46
COL8A1P27658 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC17.92■□□□□ 0.46
COL8A1P27658 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.92■□□□□ 0.46
COL8A1P27658 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
COL8A1P27658 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL8A1P27658 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL8A1P27658 FAM197Y1-201ENST00000421178 764 ntBASIC17.92■□□□□ 0.46
COL8A1P27658 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.92■□□□□ 0.46
COL8A1P27658 AC105020.6-201ENST00000621523 1217 ntBASIC17.92■□□□□ 0.46
COL8A1P27658 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL8A1P27658 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL8A1P27658 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL8A1P27658 CYP21A1P-202ENST00000354927 1481 ntBASIC17.92■□□□□ 0.46
COL8A1P27658 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
COL8A1P27658 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL8A1P27658 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL8A1P27658 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL8A1P27658 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
COL8A1P27658 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
COL8A1P27658 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL8A1P27658 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.91■□□□□ 0.46
COL8A1P27658 TERF1P1-201ENST00000311003 1181 ntBASIC17.91■□□□□ 0.46
COL8A1P27658 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.91■□□□□ 0.46
COL8A1P27658 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
COL8A1P27658 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.91■□□□□ 0.46
COL8A1P27658 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL8A1P27658 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.91■□□□□ 0.46
COL8A1P27658 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.91■□□□□ 0.46
COL8A1P27658 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL8A1P27658 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
COL8A1P27658 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.91■□□□□ 0.46
COL8A1P27658 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.9■□□□□ 0.46
COL8A1P27658 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL8A1P27658 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL8A1P27658 AC087633.2-202ENST00000565166 1439 ntBASIC17.9■□□□□ 0.46
COL8A1P27658 AC079598.2-202ENST00000546624 1451 ntBASIC17.9■□□□□ 0.46
COL8A1P27658 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
COL8A1P27658 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL8A1P27658 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL8A1P27658 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL8A1P27658 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.9■□□□□ 0.46
COL8A1P27658 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.9■□□□□ 0.46
COL8A1P27658 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL8A1P27658 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL8A1P27658 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
COL8A1P27658 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.9■□□□□ 0.46
COL8A1P27658 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.9■□□□□ 0.46
COL8A1P27658 AP000525.1-201ENST00000608286 694 ntBASIC17.9■□□□□ 0.46
COL8A1P27658 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
COL8A1P27658 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL8A1P27658 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.89■□□□□ 0.46
COL8A1P27658 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.89■□□□□ 0.46
COL8A1P27658 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL8A1P27658 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL8A1P27658 AC068473.5-201ENST00000616428 2072 ntBASIC17.89■□□□□ 0.45
COL8A1P27658 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL8A1P27658 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL8A1P27658 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL8A1P27658 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL8A1P27658 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
COL8A1P27658 MIR1238-201ENST00000408483 83 ntBASIC17.89■□□□□ 0.45
COL8A1P27658 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 AC007322.3-201ENST00000426526 701 ntBASIC17.89■□□□□ 0.45
COL8A1P27658 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 RBM17P1-201ENST00000453646 1190 ntBASIC17.89■□□□□ 0.45
COL8A1P27658 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 WWOX-216ENST00000569818 525 ntBASIC17.89■□□□□ 0.45
COL8A1P27658 AF186192.3-201ENST00000583427 947 ntBASIC17.89■□□□□ 0.45
COL8A1P27658 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.89■□□□□ 0.45
COL8A1P27658 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL8A1P27658 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL8A1P27658 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL8A1P27658 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC17.89■□□□□ 0.45
COL8A1P27658 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms