Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC12.92□□□□□ -0.34
APOBP04114 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
APOBP04114 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
APOBP04114 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
APOBP04114 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 AC110285.5-201ENST00000611501 352 ntBASIC12.92□□□□□ -0.34
APOBP04114 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC12.92□□□□□ -0.34
APOBP04114 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC12.92□□□□□ -0.34
APOBP04114 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC12.91□□□□□ -0.34
APOBP04114 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 AL390955.1-201ENST00000428694 934 ntBASIC12.91□□□□□ -0.34
APOBP04114 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC12.91□□□□□ -0.34
APOBP04114 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC12.91□□□□□ -0.34
APOBP04114 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC12.91□□□□□ -0.34
APOBP04114 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC12.91□□□□□ -0.34
APOBP04114 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC12.91□□□□□ -0.34
APOBP04114 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC12.91□□□□□ -0.34
APOBP04114 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
APOBP04114 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC12.91□□□□□ -0.34
APOBP04114 USF2-205ENST00000594064 1179 ntTSL 2 BASIC12.91□□□□□ -0.34
APOBP04114 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC12.91□□□□□ -0.34
APOBP04114 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 KRT18P22-201ENST00000402024 1347 ntBASIC12.91□□□□□ -0.34
APOBP04114 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC12.91□□□□□ -0.34
APOBP04114 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC12.91□□□□□ -0.34
APOBP04114 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC12.91□□□□□ -0.34
APOBP04114 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC12.91□□□□□ -0.34
APOBP04114 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC12.91□□□□□ -0.34
APOBP04114 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC12.91□□□□□ -0.34
APOBP04114 GUK1-204ENST00000366721 689 ntTSL 3 BASIC12.91□□□□□ -0.34
APOBP04114 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC12.91□□□□□ -0.34
APOBP04114 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
APOBP04114 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC12.9□□□□□ -0.34
APOBP04114 KRT126P-201ENST00000549467 1181 ntBASIC12.9□□□□□ -0.34
APOBP04114 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 LINC01568-207ENST00000641790 1380 ntBASIC12.9□□□□□ -0.34
APOBP04114 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC12.9□□□□□ -0.34
APOBP04114 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.34
APOBP04114 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC12.9□□□□□ -0.34
APOBP04114 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
APOBP04114 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC12.9□□□□□ -0.34
APOBP04114 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
APOBP04114 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC12.9□□□□□ -0.34
APOBP04114 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
APOBP04114 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC12.9□□□□□ -0.35
APOBP04114 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
APOBP04114 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
APOBP04114 DUSP5P1-201ENST00000441325 1139 ntBASIC12.89□□□□□ -0.35
APOBP04114 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC12.89□□□□□ -0.35
APOBP04114 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC12.89□□□□□ -0.35
APOBP04114 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
APOBP04114 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
APOBP04114 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC12.89□□□□□ -0.35
APOBP04114 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC12.89□□□□□ -0.35
APOBP04114 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
APOBP04114 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
APOBP04114 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
APOBP04114 UPK3BP1-201ENST00000428678 509 ntBASIC12.89□□□□□ -0.35
APOBP04114 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
APOBP04114 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC12.89□□□□□ -0.35
APOBP04114 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC12.89□□□□□ -0.35
APOBP04114 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC12.89□□□□□ -0.35
APOBP04114 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
APOBP04114 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC12.89□□□□□ -0.35
APOBP04114 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC12.89□□□□□ -0.35
APOBP04114 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
APOBP04114 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC12.89□□□□□ -0.35
APOBP04114 KRT16P5-201ENST00000455284 522 ntBASIC12.89□□□□□ -0.35
APOBP04114 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
APOBP04114 F2R-202ENST00000505600 442 ntTSL 2 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms