Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
BRD4O60885 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
BRD4O60885 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
BRD4O60885 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
BRD4O60885 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC28.41■■■□□ 2.14
BRD4O60885 KRT18P68-201ENST00000392293 1000 ntBASIC28.41■■■□□ 2.14
BRD4O60885 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC28.41■■■□□ 2.14
BRD4O60885 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC28.41■■■□□ 2.14
BRD4O60885 ARL16-209ENST00000573715 763 ntTSL 3 BASIC28.41■■■□□ 2.14
BRD4O60885 ARL16-211ENST00000576135 694 ntTSL 3 BASIC28.41■■■□□ 2.14
BRD4O60885 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC28.41■■■□□ 2.14
BRD4O60885 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
BRD4O60885 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
BRD4O60885 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC28.41■■■□□ 2.14
BRD4O60885 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC28.41■■■□□ 2.14
BRD4O60885 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC28.4■■■□□ 2.14
BRD4O60885 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC28.4■■■□□ 2.14
BRD4O60885 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
BRD4O60885 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC28.4■■■□□ 2.14
BRD4O60885 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC28.4■■■□□ 2.14
BRD4O60885 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
BRD4O60885 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC28.4■■■□□ 2.14
BRD4O60885 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC28.4■■■□□ 2.14
BRD4O60885 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
BRD4O60885 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
BRD4O60885 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
BRD4O60885 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC28.39■■■□□ 2.14
BRD4O60885 AC008550.1-201ENST00000511500 884 ntBASIC28.39■■■□□ 2.14
BRD4O60885 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC28.39■■■□□ 2.14
BRD4O60885 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
BRD4O60885 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
BRD4O60885 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
BRD4O60885 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
BRD4O60885 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
BRD4O60885 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC28.39■■■□□ 2.14
BRD4O60885 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
BRD4O60885 AL049796.1-201ENST00000565336 1766 ntBASIC28.39■■■□□ 2.13
BRD4O60885 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC28.39■■■□□ 2.13
BRD4O60885 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.13
BRD4O60885 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
BRD4O60885 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC28.38■■■□□ 2.13
BRD4O60885 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
BRD4O60885 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
BRD4O60885 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
BRD4O60885 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC28.38■■■□□ 2.13
BRD4O60885 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
BRD4O60885 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
BRD4O60885 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC28.38■■■□□ 2.13
BRD4O60885 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
BRD4O60885 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC28.37■■■□□ 2.13
BRD4O60885 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
BRD4O60885 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC28.37■■■□□ 2.13
BRD4O60885 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC28.37■■■□□ 2.13
BRD4O60885 USP48-205ENST00000421625 2818 ntTSL 2 BASIC28.37■■■□□ 2.13
BRD4O60885 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC28.37■■■□□ 2.13
BRD4O60885 RHOD-202ENST00000532559 538 ntTSL 3 BASIC28.37■■■□□ 2.13
BRD4O60885 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC28.37■■■□□ 2.13
BRD4O60885 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC28.37■■■□□ 2.13
BRD4O60885 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
BRD4O60885 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC28.37■■■□□ 2.13
BRD4O60885 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC28.37■■■□□ 2.13
BRD4O60885 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
BRD4O60885 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC28.37■■■□□ 2.13
BRD4O60885 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC28.37■■■□□ 2.13
BRD4O60885 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC28.37■■■□□ 2.13
BRD4O60885 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC28.37■■■□□ 2.13
BRD4O60885 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC28.37■■■□□ 2.13
BRD4O60885 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
BRD4O60885 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC28.36■■■□□ 2.13
BRD4O60885 CYP21A1P-202ENST00000354927 1481 ntBASIC28.36■■■□□ 2.13
BRD4O60885 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
BRD4O60885 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
BRD4O60885 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
BRD4O60885 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
BRD4O60885 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
BRD4O60885 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
BRD4O60885 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC28.36■■■□□ 2.13
BRD4O60885 AC105020.6-201ENST00000621523 1217 ntBASIC28.36■■■□□ 2.13
BRD4O60885 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
BRD4O60885 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
BRD4O60885 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC28.35■■■□□ 2.13
BRD4O60885 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC28.35■■■□□ 2.13
BRD4O60885 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
BRD4O60885 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
BRD4O60885 HES2-205ENST00000487437 968 ntTSL 3 BASIC28.35■■■□□ 2.13
BRD4O60885 SLC29A4P2-201ENST00000504749 1089 ntBASIC28.35■■■□□ 2.13
BRD4O60885 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC28.35■■■□□ 2.13
BRD4O60885 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
BRD4O60885 AC092368.3-202ENST00000574180 1591 ntBASIC28.34■■■□□ 2.13
BRD4O60885 MME-217ENST00000616757 1315 ntTSL 5 BASIC28.34■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms