Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
NPHP1O15259 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
NPHP1O15259 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 TK2-204ENST00000525974 1178 ntTSL 2 BASIC25.81■■□□□ 1.72
NPHP1O15259 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC25.81■■□□□ 1.72
NPHP1O15259 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 KRT17P2-201ENST00000300992 1314 ntBASIC25.81■■□□□ 1.72
NPHP1O15259 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
NPHP1O15259 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP1O15259 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC25.8■■□□□ 1.72
NPHP1O15259 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP1O15259 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC25.8■■□□□ 1.72
NPHP1O15259 AC012618.2-201ENST00000428058 849 ntBASIC25.8■■□□□ 1.72
NPHP1O15259 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC25.8■■□□□ 1.72
NPHP1O15259 LY6E-205ENST00000519611 635 ntTSL 3 BASIC25.8■■□□□ 1.72
NPHP1O15259 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC25.8■■□□□ 1.72
NPHP1O15259 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC25.8■■□□□ 1.72
NPHP1O15259 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
NPHP1O15259 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC25.79■■□□□ 1.72
NPHP1O15259 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.79■■□□□ 1.72
NPHP1O15259 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC25.79■■□□□ 1.72
NPHP1O15259 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
NPHP1O15259 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC25.79■■□□□ 1.72
NPHP1O15259 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC25.79■■□□□ 1.72
NPHP1O15259 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
NPHP1O15259 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 RPS2P55-201ENST00000397318 883 ntBASIC25.79■■□□□ 1.72
NPHP1O15259 TSPY7P-201ENST00000431358 1114 ntBASIC25.79■■□□□ 1.72
NPHP1O15259 FAM210CP-201ENST00000445714 574 ntBASIC25.79■■□□□ 1.72
NPHP1O15259 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC25.79■■□□□ 1.72
NPHP1O15259 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 AC107956.1-201ENST00000494359 873 ntBASIC25.79■■□□□ 1.72
NPHP1O15259 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC25.79■■□□□ 1.72
NPHP1O15259 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC25.79■■□□□ 1.72
NPHP1O15259 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC25.79■■□□□ 1.72
NPHP1O15259 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
NPHP1O15259 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC25.79■■□□□ 1.72
NPHP1O15259 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC25.79■■□□□ 1.72
NPHP1O15259 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
NPHP1O15259 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC25.79■■□□□ 1.72
NPHP1O15259 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
NPHP1O15259 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
NPHP1O15259 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC25.78■■□□□ 1.72
NPHP1O15259 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
NPHP1O15259 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC25.78■■□□□ 1.72
NPHP1O15259 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC25.78■■□□□ 1.72
NPHP1O15259 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
NPHP1O15259 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
NPHP1O15259 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC25.78■■□□□ 1.72
NPHP1O15259 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
NPHP1O15259 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC25.78■■□□□ 1.72
NPHP1O15259 ABHD17AP6-201ENST00000458502 1044 ntBASIC25.78■■□□□ 1.72
NPHP1O15259 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC25.78■■□□□ 1.72
NPHP1O15259 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC25.78■■□□□ 1.72
NPHP1O15259 AC006557.6-201ENST00000623071 864 ntBASIC25.78■■□□□ 1.72
NPHP1O15259 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
NPHP1O15259 PKD1P6-201ENST00000343738 4769 ntBASIC25.78■■□□□ 1.72
NPHP1O15259 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
NPHP1O15259 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
NPHP1O15259 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC25.77■■□□□ 1.72
NPHP1O15259 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
NPHP1O15259 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC25.77■■□□□ 1.72
NPHP1O15259 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
NPHP1O15259 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
NPHP1O15259 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
NPHP1O15259 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
NPHP1O15259 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC25.77■■□□□ 1.72
NPHP1O15259 KRT18P21-201ENST00000515767 1272 ntBASIC25.77■■□□□ 1.72
NPHP1O15259 REXO2-216ENST00000544196 452 ntTSL 3 BASIC25.77■■□□□ 1.72
NPHP1O15259 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC25.77■■□□□ 1.72
NPHP1O15259 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
NPHP1O15259 AC233702.5-201ENST00000584107 538 ntBASIC25.77■■□□□ 1.72
NPHP1O15259 KLF2-202ENST00000592003 564 ntTSL 3 BASIC25.77■■□□□ 1.72
NPHP1O15259 MTDHP1-201ENST00000605323 784 ntBASIC25.77■■□□□ 1.72
NPHP1O15259 AP001412.1-201ENST00000608405 714 ntBASIC25.77■■□□□ 1.72
NPHP1O15259 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC25.77■■□□□ 1.72
NPHP1O15259 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
NPHP1O15259 C9orf163-202ENST00000624034 2573 ntBASIC25.76■■□□□ 1.71
NPHP1O15259 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.76■■□□□ 1.71
NPHP1O15259 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
NPHP1O15259 PGM5P4-201ENST00000421970 445 ntBASIC25.76■■□□□ 1.71
NPHP1O15259 RPS20-210ENST00000523936 899 ntTSL 2 BASIC25.76■■□□□ 1.71
NPHP1O15259 BX088651.1-201ENST00000540551 451 ntBASIC25.76■■□□□ 1.71
NPHP1O15259 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms