Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGN4O00479 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HMGN4O00479 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HMGN4O00479 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
HMGN4O00479 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
HMGN4O00479 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HMGN4O00479 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGN4O00479 PCDHAC2-203ENST00000615316 3011 ntBASIC19.05■□□□□ 0.64
HMGN4O00479 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
HMGN4O00479 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
HMGN4O00479 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.05■□□□□ 0.64
HMGN4O00479 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGN4O00479 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGN4O00479 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 UBE2DNL-204ENST00000602536 740 ntBASIC19.05■□□□□ 0.64
HMGN4O00479 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGN4O00479 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
HMGN4O00479 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.05■□□□□ 0.64
HMGN4O00479 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HMGN4O00479 AC099778.1-201ENST00000568593 1911 ntBASIC19.05■□□□□ 0.64
HMGN4O00479 AC112907.3-201ENST00000577781 2400 ntBASIC19.05■□□□□ 0.64
HMGN4O00479 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.05■□□□□ 0.64
HMGN4O00479 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HMGN4O00479 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
HMGN4O00479 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HMGN4O00479 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HMGN4O00479 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
HMGN4O00479 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGN4O00479 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGN4O00479 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.04■□□□□ 0.64
HMGN4O00479 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.04■□□□□ 0.64
HMGN4O00479 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.04■□□□□ 0.64
HMGN4O00479 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.04■□□□□ 0.64
HMGN4O00479 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
HMGN4O00479 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
HMGN4O00479 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
HMGN4O00479 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HMGN4O00479 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
HMGN4O00479 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGN4O00479 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.03■□□□□ 0.64
HMGN4O00479 AC007322.3-201ENST00000426526 701 ntBASIC19.03■□□□□ 0.64
HMGN4O00479 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGN4O00479 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGN4O00479 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.03■□□□□ 0.64
HMGN4O00479 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGN4O00479 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGN4O00479 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.03■□□□□ 0.64
HMGN4O00479 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.03■□□□□ 0.64
HMGN4O00479 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HMGN4O00479 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.03■□□□□ 0.64
HMGN4O00479 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGN4O00479 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGN4O00479 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
HMGN4O00479 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGN4O00479 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
HMGN4O00479 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGN4O00479 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.02■□□□□ 0.64
HMGN4O00479 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.02■□□□□ 0.64
HMGN4O00479 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGN4O00479 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
HMGN4O00479 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
HMGN4O00479 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms