Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
TRIM49BA6NDI0 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
TRIM49BA6NDI0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.58■■□□□ 1.2
TRIM49BA6NDI0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
TRIM49BA6NDI0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
TRIM49BA6NDI0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.2
TRIM49BA6NDI0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 KRT19P1-201ENST00000405746 1186 ntBASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 MIR2861-201ENST00000636310 90 ntBASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 AC099778.1-201ENST00000568593 1911 ntBASIC22.57■■□□□ 1.2
TRIM49BA6NDI0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 AC087623.3-201ENST00000607047 1098 ntBASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 AC243732.1-201ENST00000612648 864 ntBASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.56■■□□□ 1.2
TRIM49BA6NDI0 AC092720.2-201ENST00000602388 1665 ntBASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 SLC7A5P1-201ENST00000568957 537 ntBASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 NTF6G-201ENST00000591094 616 ntBASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
TRIM49BA6NDI0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 AC097381.1-201ENST00000429019 1296 ntBASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22.54■■□□□ 1.2
TRIM49BA6NDI0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 PLD4-205ENST00000553861 667 ntTSL 2 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 TFG-210ENST00000620299 1289 ntTSL 5 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 MYCNOS-205ENST00000641950 531 ntBASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
TRIM49BA6NDI0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM49BA6NDI0 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM49BA6NDI0 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
TRIM49BA6NDI0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.52■■□□□ 1.2
TRIM49BA6NDI0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM49BA6NDI0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms