Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PCDHA3Q9Y5H8 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 AP001160.3-201ENST00000601484 763 ntBASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 MIR2861-201ENST00000636310 90 ntBASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PCDHA3Q9Y5H8 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 AC123595.1-201ENST00000440769 1046 ntBASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PCDHA3Q9Y5H8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 TERF1P2-201ENST00000583350 1212 ntBASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 AC007952.6-201ENST00000573168 2673 ntBASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 AC003957.1-201ENST00000625108 2673 ntBASIC21.42■■□□□ 1.02
PCDHA3Q9Y5H8 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 KRT18P20-201ENST00000548986 1279 ntBASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PCDHA3Q9Y5H8 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 CCDC92B-201ENST00000575506 885 ntBASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PCDHA3Q9Y5H8 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHA3Q9Y5H8 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHA3Q9Y5H8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PCDHA3Q9Y5H8 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.39■■□□□ 1.02
PCDHA3Q9Y5H8 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.39■■□□□ 1.02
PCDHA3Q9Y5H8 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 MIR638-201ENST00000385237 100 ntBASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
PCDHA3Q9Y5H8 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.38■■□□□ 1.01
PCDHA3Q9Y5H8 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms