Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC091799.1-201ENST00000422823 811 ntBASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 AC034268.1-201ENST00000441047 882 ntBASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 NTF6G-201ENST00000591094 616 ntBASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 AL121603.2-201ENST00000557373 2117 ntBASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS29Q9UBQ0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
VPS29Q9UBQ0 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
VPS29Q9UBQ0 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.64■□□□□ 0.74
VPS29Q9UBQ0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS29Q9UBQ0 SLC25A24-204ENST00000569674 2357 ntBASIC19.64■□□□□ 0.74
VPS29Q9UBQ0 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 UBE2DNL-204ENST00000602536 740 ntBASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 MIR6821-201ENST00000617625 74 ntBASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS29Q9UBQ0 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS29Q9UBQ0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 MIR2861-201ENST00000636310 90 ntBASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
VPS29Q9UBQ0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms