Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC40Q9H9A6 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LRRC40Q9H9A6 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 AC007322.3-201ENST00000426526 701 ntBASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 AC020907.5-201ENST00000624372 1936 ntBASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.8■□□□□ 0.92
LRRC40Q9H9A6 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LRRC40Q9H9A6 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 AC026271.2-201ENST00000428091 497 ntBASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 KRT18P11-201ENST00000435214 1283 ntBASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
LRRC40Q9H9A6 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRC40Q9H9A6 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRC40Q9H9A6 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRC40Q9H9A6 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms