Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
VPS35Q96QK1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS35Q96QK1 AC005229.4-201ENST00000610085 2198 ntBASIC20.36■□□□□ 0.85
VPS35Q96QK1 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS35Q96QK1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
VPS35Q96QK1 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
VPS35Q96QK1 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS35Q96QK1 ID1-201ENST00000376105 1233 ntBASIC20.36■□□□□ 0.85
VPS35Q96QK1 TSPY6P-201ENST00000448518 926 ntBASIC20.36■□□□□ 0.85
VPS35Q96QK1 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS35Q96QK1 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS35Q96QK1 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.36■□□□□ 0.85
VPS35Q96QK1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS35Q96QK1 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 SLC25A24-204ENST00000569674 2357 ntBASIC20.35■□□□□ 0.85
VPS35Q96QK1 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS35Q96QK1 MCRIP2P1-201ENST00000394346 511 ntBASIC20.35■□□□□ 0.85
VPS35Q96QK1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 MKRN4P-201ENST00000444706 1521 ntBASIC20.35■□□□□ 0.85
VPS35Q96QK1 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS35Q96QK1 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 CYP21A1P-202ENST00000354927 1481 ntBASIC20.35■□□□□ 0.85
VPS35Q96QK1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS35Q96QK1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VPS35Q96QK1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS35Q96QK1 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 AC104771.1-201ENST00000603335 964 ntBASIC20.34■□□□□ 0.85
VPS35Q96QK1 AL109923.1-201ENST00000618799 583 ntBASIC20.34■□□□□ 0.85
VPS35Q96QK1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
VPS35Q96QK1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 PLK5-205ENST00000642079 1969 ntBASIC20.34■□□□□ 0.85
VPS35Q96QK1 AC027702.1-201ENST00000563810 1770 ntBASIC20.34■□□□□ 0.85
VPS35Q96QK1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS35Q96QK1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS35Q96QK1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS35Q96QK1 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS35Q96QK1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS35Q96QK1 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
VPS35Q96QK1 SLC29A4P1-201ENST00000398760 971 ntBASIC20.33■□□□□ 0.85
VPS35Q96QK1 HLA-L-209ENST00000420110 1011 ntBASIC20.33■□□□□ 0.85
VPS35Q96QK1 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.33■□□□□ 0.85
VPS35Q96QK1 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.33■□□□□ 0.85
VPS35Q96QK1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
VPS35Q96QK1 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.33■□□□□ 0.84
VPS35Q96QK1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS35Q96QK1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS35Q96QK1 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS35Q96QK1 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS35Q96QK1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS35Q96QK1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 CYP2T3P-201ENST00000601990 817 ntBASIC20.32■□□□□ 0.84
VPS35Q96QK1 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS35Q96QK1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VPS35Q96QK1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS35Q96QK1 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
VPS35Q96QK1 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS35Q96QK1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms