Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.04■□□□□ 0.16
LINC01006Q8NI28 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 AL023875.1-201ENST00000640777 796 ntBASIC16.04■□□□□ 0.16
LINC01006Q8NI28 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LINC01006Q8NI28 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 AL356652.1-201ENST00000615962 565 ntBASIC16.03■□□□□ 0.16
LINC01006Q8NI28 AC006557.6-201ENST00000623071 864 ntBASIC16.03■□□□□ 0.16
LINC01006Q8NI28 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LINC01006Q8NI28 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 AL390719.1-204ENST00000412397 1219 ntBASIC16.02■□□□□ 0.16
LINC01006Q8NI28 AC012618.2-201ENST00000428058 849 ntBASIC16.02■□□□□ 0.16
LINC01006Q8NI28 AC133681.1-201ENST00000465482 601 ntBASIC16.02■□□□□ 0.16
LINC01006Q8NI28 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.02■□□□□ 0.16
LINC01006Q8NI28 AC233702.5-201ENST00000584107 538 ntBASIC16.02■□□□□ 0.16
LINC01006Q8NI28 AC124016.1-201ENST00000609552 612 ntBASIC16.02■□□□□ 0.16
LINC01006Q8NI28 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.02■□□□□ 0.16
LINC01006Q8NI28 REXO1L12P-201ENST00000622156 912 ntBASIC16.02■□□□□ 0.16
LINC01006Q8NI28 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.02■□□□□ 0.15
LINC01006Q8NI28 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LINC01006Q8NI28 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LINC01006Q8NI28 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.02■□□□□ 0.15
LINC01006Q8NI28 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LINC01006Q8NI28 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 RPS2P55-201ENST00000397318 883 ntBASIC16.01■□□□□ 0.15
LINC01006Q8NI28 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 AC239809.2-201ENST00000415381 517 ntBASIC16.01■□□□□ 0.15
LINC01006Q8NI28 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 AC107956.1-201ENST00000494359 873 ntBASIC16.01■□□□□ 0.15
LINC01006Q8NI28 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LINC01006Q8NI28 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms