Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 MIR663A-201ENST00000385250 93 ntBASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC16.93■□□□□ 0.3
PDLIM3Q53GG5 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 FEM1AP1-201ENST00000431297 1995 ntBASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.92■□□□□ 0.3
PDLIM3Q53GG5 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 AP006587.3-201ENST00000525742 1516 ntBASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PDLIM3Q53GG5 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PDLIM3Q53GG5 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms