Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CPT2-209ENST00000636935 803 ntTSL 5 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 AFG3L1P-217ENST00000557444 2447 ntBASIC15.6■□□□□ 0.09
HLA-DMBP28068 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 DET1-207ENST00000564406 2315 ntTSL 2 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC15.6■□□□□ 0.09
HLA-DMBP28068 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC15.59■□□□□ 0.09
HLA-DMBP28068 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
HLA-DMBP28068 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
HLA-DMBP28068 AC011484.1-201ENST00000377652 1995 ntBASIC15.58■□□□□ 0.09
HLA-DMBP28068 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC15.58■□□□□ 0.09
HLA-DMBP28068 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
HLA-DMBP28068 AL512408.1-201ENST00000569378 2000 ntBASIC15.58■□□□□ 0.09
HLA-DMBP28068 ME2-218ENST00000640965 2476 ntTSL 5 BASIC15.58■□□□□ 0.09
HLA-DMBP28068 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC15.58■□□□□ 0.09
HLA-DMBP28068 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DMBP28068 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DMBP28068 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DMBP28068 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC15.58■□□□□ 0.08
HLA-DMBP28068 AC123595.1-201ENST00000440769 1046 ntBASIC15.58■□□□□ 0.08
HLA-DMBP28068 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC15.58■□□□□ 0.08
HLA-DMBP28068 SERP1-208ENST00000491660 830 ntTSL 2 BASIC15.58■□□□□ 0.08
HLA-DMBP28068 RAB43-208ENST00000615093 783 ntTSL 5 BASIC15.58■□□□□ 0.08
HLA-DMBP28068 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DMBP28068 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC15.58■□□□□ 0.08
HLA-DMBP28068 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
HLA-DMBP28068 KRT87P-202ENST00000534226 1464 ntBASIC15.58■□□□□ 0.08
HLA-DMBP28068 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 GLI3-203ENST00000437480 451 ntTSL 2 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HLA-DMBP28068 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC15.57■□□□□ 0.08
HLA-DMBP28068 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC15.56■□□□□ 0.08
HLA-DMBP28068 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
HLA-DMBP28068 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC15.56■□□□□ 0.08
HLA-DMBP28068 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC15.56■□□□□ 0.08
HLA-DMBP28068 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 AC008175.2-201ENST00000612840 297 ntBASIC15.56■□□□□ 0.08
HLA-DMBP28068 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC15.56■□□□□ 0.08
HLA-DMBP28068 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HLA-DMBP28068 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms