Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.27■■□□□ 1
COL9A1P20849 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL9A1P20849 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.27■■□□□ 1
COL9A1P20849 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.27■■□□□ 1
COL9A1P20849 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.27■■□□□ 1
COL9A1P20849 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL9A1P20849 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.27■■□□□ 1
COL9A1P20849 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL9A1P20849 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.27■■□□□ 1
COL9A1P20849 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.27■□□□□ 0.99
COL9A1P20849 KRT18P22-201ENST00000402024 1347 ntBASIC21.27■□□□□ 0.99
COL9A1P20849 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
COL9A1P20849 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.26■□□□□ 0.99
COL9A1P20849 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL9A1P20849 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
COL9A1P20849 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.26■□□□□ 0.99
COL9A1P20849 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL9A1P20849 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL9A1P20849 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL9A1P20849 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.26■□□□□ 0.99
COL9A1P20849 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.26■□□□□ 0.99
COL9A1P20849 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.26■□□□□ 0.99
COL9A1P20849 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.26■□□□□ 0.99
COL9A1P20849 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL9A1P20849 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL9A1P20849 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.26■□□□□ 0.99
COL9A1P20849 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL9A1P20849 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL9A1P20849 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL9A1P20849 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.25■□□□□ 0.99
COL9A1P20849 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL9A1P20849 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL9A1P20849 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.25■□□□□ 0.99
COL9A1P20849 PVRIG2P-201ENST00000435460 978 ntBASIC21.25■□□□□ 0.99
COL9A1P20849 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.25■□□□□ 0.99
COL9A1P20849 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL9A1P20849 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.25■□□□□ 0.99
COL9A1P20849 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL9A1P20849 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.25■□□□□ 0.99
COL9A1P20849 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL9A1P20849 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL9A1P20849 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
COL9A1P20849 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL9A1P20849 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL9A1P20849 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL9A1P20849 SLC25A3P1-201ENST00000443844 931 ntBASIC21.24■□□□□ 0.99
COL9A1P20849 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.24■□□□□ 0.99
COL9A1P20849 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.24■□□□□ 0.99
COL9A1P20849 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.24■□□□□ 0.99
COL9A1P20849 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.24■□□□□ 0.99
COL9A1P20849 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL9A1P20849 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL9A1P20849 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.24■□□□□ 0.99
COL9A1P20849 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL9A1P20849 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL9A1P20849 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL9A1P20849 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.23■□□□□ 0.99
COL9A1P20849 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL9A1P20849 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL9A1P20849 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL9A1P20849 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.23■□□□□ 0.99
COL9A1P20849 KRT18P16-201ENST00000510337 1294 ntBASIC21.23■□□□□ 0.99
COL9A1P20849 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.23■□□□□ 0.99
COL9A1P20849 AC243732.1-201ENST00000612648 864 ntBASIC21.23■□□□□ 0.99
COL9A1P20849 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL9A1P20849 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL9A1P20849 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
COL9A1P20849 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
COL9A1P20849 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.23■□□□□ 0.99
COL9A1P20849 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL9A1P20849 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.22■□□□□ 0.99
COL9A1P20849 AC026471.6-201ENST00000622954 1905 ntBASIC21.22■□□□□ 0.99
COL9A1P20849 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.22■□□□□ 0.99
COL9A1P20849 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.22■□□□□ 0.99
COL9A1P20849 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
COL9A1P20849 KRASP1-201ENST00000407852 552 ntBASIC21.22■□□□□ 0.99
COL9A1P20849 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
COL9A1P20849 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.22■□□□□ 0.99
COL9A1P20849 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.22■□□□□ 0.99
COL9A1P20849 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.22■□□□□ 0.99
COL9A1P20849 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.22■□□□□ 0.99
COL9A1P20849 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
COL9A1P20849 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.22■□□□□ 0.99
COL9A1P20849 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.22■□□□□ 0.99
COL9A1P20849 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.22■□□□□ 0.99
COL9A1P20849 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL9A1P20849 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.21■□□□□ 0.99
COL9A1P20849 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL9A1P20849 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL9A1P20849 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms