Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCNAP12004 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
PCNAP12004 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.91■□□□□ 0.78
PCNAP12004 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
PCNAP12004 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.91■□□□□ 0.78
PCNAP12004 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
PCNAP12004 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.91■□□□□ 0.78
PCNAP12004 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.91■□□□□ 0.78
PCNAP12004 KRT18P20-201ENST00000548986 1279 ntBASIC19.91■□□□□ 0.78
PCNAP12004 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.91■□□□□ 0.78
PCNAP12004 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.91■□□□□ 0.78
PCNAP12004 RARRES2P11-201ENST00000635158 484 ntBASIC19.91■□□□□ 0.78
PCNAP12004 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
PCNAP12004 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PCNAP12004 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
PCNAP12004 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCNAP12004 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.91■□□□□ 0.78
PCNAP12004 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.9■□□□□ 0.78
PCNAP12004 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
PCNAP12004 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PCNAP12004 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.9■□□□□ 0.78
PCNAP12004 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.9■□□□□ 0.78
PCNAP12004 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
PCNAP12004 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCNAP12004 FEM1AP1-201ENST00000431297 1995 ntBASIC19.9■□□□□ 0.78
PCNAP12004 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.9■□□□□ 0.78
PCNAP12004 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.9■□□□□ 0.78
PCNAP12004 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
PCNAP12004 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
PCNAP12004 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.89■□□□□ 0.78
PCNAP12004 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
PCNAP12004 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCNAP12004 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCNAP12004 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCNAP12004 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
PCNAP12004 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.89■□□□□ 0.77
PCNAP12004 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.89■□□□□ 0.77
PCNAP12004 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCNAP12004 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PCNAP12004 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
PCNAP12004 RARRES2P6-201ENST00000567333 442 ntBASIC19.89■□□□□ 0.77
PCNAP12004 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.89■□□□□ 0.77
PCNAP12004 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCNAP12004 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.89■□□□□ 0.77
PCNAP12004 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
PCNAP12004 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
PCNAP12004 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCNAP12004 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.89■□□□□ 0.77
PCNAP12004 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PCNAP12004 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.88■□□□□ 0.77
PCNAP12004 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.88■□□□□ 0.77
PCNAP12004 UBE2DNL-204ENST00000602536 740 ntBASIC19.88■□□□□ 0.77
PCNAP12004 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.88■□□□□ 0.77
PCNAP12004 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
PCNAP12004 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
PCNAP12004 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PCNAP12004 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PCNAP12004 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.87■□□□□ 0.77
PCNAP12004 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.87■□□□□ 0.77
PCNAP12004 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
PCNAP12004 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
PCNAP12004 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.87■□□□□ 0.77
PCNAP12004 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms