Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 DGCR8-209ENST00000495826 4695 ntTSL 1 (best)14.48□□□□□ -0.091e-6■■■□□ 15.9
SMNDC1O75940 DGCR8-210ENST00000498171 3661 ntTSL 1 (best)13.01□□□□□ -0.331e-6■■■□□ 15.9
SMNDC1O75940 DGCR8-203ENST00000407755 4129 ntTSL 1 (best) BASIC12.47□□□□□ -0.411e-6■■■□□ 15.9
SMNDC1O75940 SREBF1-203ENST00000395751 4653 ntTSL 217.86■□□□□ 0.453e-8■■■□□ 15.9
SMNDC1O75940 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.33e-8■■■□□ 15.9
SMNDC1O75940 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.073e-8■■■□□ 15.9
SMNDC1O75940 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.093e-8■■■□□ 15.9
SMNDC1O75940 PLCG1-206ENST00000470528 510 ntTSL 417.25■□□□□ 0.356e-9■■■□□ 15.9
SMNDC1O75940 SNORD83A-201ENST00000386747 95 ntBASIC8.11□□□□□ -1.111e-323■■■□□ 15.8
SMNDC1O75940 CLCN7-205ENST00000563642 4184 ntTSL 214.88□□□□□ -0.036e-8■■■□□ 15.8
SMNDC1O75940 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.21e-18■■■□□ 15.8
SMNDC1O75940 HNRNPL-203ENST00000595164 2404 ntTSL 214.09□□□□□ -0.152e-7■■■□□ 15.8
SMNDC1O75940 HNRNPL-206ENST00000597731 3094 ntTSL 210.79□□□□□ -0.682e-7■■■□□ 15.8
SMNDC1O75940 TRAF4-209ENST00000473421 585 ntTSL 311.42□□□□□ -0.582e-7■■■□□ 15.8
SMNDC1O75940 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.058e-7■■■□□ 15.8
SMNDC1O75940 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.078e-7■■■□□ 15.8
SMNDC1O75940 FURIN-201ENST00000268171 4244 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.328e-7■■■□□ 15.8
SMNDC1O75940 ATP5B-210ENST00000552959 1085 ntTSL 316.95■□□□□ 0.31e-18■■■□□ 15.7
SMNDC1O75940 ATP5B-211ENST00000553007 814 ntTSL 516.86■□□□□ 0.291e-18■■■□□ 15.7
SMNDC1O75940 ATP5B-205ENST00000548647 682 ntTSL 514.28□□□□□ -0.121e-18■■■□□ 15.7
SMNDC1O75940 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.43e-6■■■□□ 15.7
SMNDC1O75940 BCAR1-222ENST00000569340 714 ntTSL 311.95□□□□□ -0.57e-8■■■□□ 15.7
SMNDC1O75940 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.142e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.98■■□□□ 1.272e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.982e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-209ENST00000474308 1854 ntTSL 218.09■□□□□ 0.492e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.452e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.51■□□□□ 0.392e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-213ENST00000487165 2020 ntTSL 1 (best)16.95■□□□□ 0.32e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-220ENST00000634537 1086 ntTSL 516.16■□□□□ 0.182e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.75■□□□□ 0.112e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-215ENST00000494454 2004 ntTSL 1 (best)15.14■□□□□ 0.012e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-219ENST00000634471 748 ntTSL 315.05■□□□□ -02e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-207ENST00000462843 810 ntTSL 315.05■□□□□ -02e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-216ENST00000495655 2700 ntTSL 214.52□□□□□ -0.092e-6■■■□□ 15.6
SMNDC1O75940 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC12.49□□□□□ -0.412e-6■■■□□ 15.6
SMNDC1O75940 ADAMTSL4-205ENST00000483335 1826 ntTSL 1 (best)14.48□□□□□ -0.096e-7■■■□□ 15.6
SMNDC1O75940 EIF4G1-232ENST00000466311 573 ntTSL 213.37□□□□□ -0.274e-89■■■□□ 15.6
SMNDC1O75940 EIF4G1-225ENST00000448284 677 ntTSL 512.05□□□□□ -0.484e-89■■■□□ 15.6
SMNDC1O75940 RPL3-215ENST00000481985 557 ntTSL 212.2□□□□□ -0.465e-17■■■□□ 15.6
SMNDC1O75940 RPL3-213ENST00000471290 481 ntTSL 29.83□□□□□ -0.845e-17■■■□□ 15.6
SMNDC1O75940 TRAF4-215ENST00000584944 825 ntTSL 212.4□□□□□ -0.422e-7■■■□□ 15.6
SMNDC1O75940 HGS-208ENST00000572392 824 ntTSL 514.08□□□□□ -0.163e-6■■■□□ 15.6
SMNDC1O75940 ALDOA-214ENST00000564688 613 ntTSL 510.34□□□□□ -0.757e-11■■■□□ 15.6
SMNDC1O75940 DKC1-212ENST00000492372 406 ntTSL 28.05□□□□□ -1.121e-323■■■□□ 15.6
SMNDC1O75940 RANBP1-214ENST00000488484 699 ntTSL 213.59□□□□□ -0.233e-12■■■□□ 15.6
SMNDC1O75940 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.595e-6■■■□□ 15.6
SMNDC1O75940 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.515e-6■■■□□ 15.6
SMNDC1O75940 FAM207A-203ENST00000458015 643 ntTSL 517.96■□□□□ 0.475e-6■■■□□ 15.6
SMNDC1O75940 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.965e-7■■■□□ 15.6
SMNDC1O75940 RABL6-206ENST00000436380 2547 ntAPPRIS ALT2 TSL 216.13■□□□□ 0.175e-7■■■□□ 15.6
SMNDC1O75940 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC11.35□□□□□ -0.595e-7■■■□□ 15.6
SMNDC1O75940 SRSF11-209ENST00000463877 617 ntTSL 225.57■■□□□ 1.685e-33■■■□□ 15.6
SMNDC1O75940 SRSF11-210ENST00000469170 668 ntTSL 217.02■□□□□ 0.325e-33■■■□□ 15.6
SMNDC1O75940 HNRNPL-207ENST00000598985 900 ntTSL 512.75□□□□□ -0.372e-6■■■□□ 15.6
SMNDC1O75940 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.255e-8■■■□□ 15.6
SMNDC1O75940 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.41■■□□□ 1.185e-8■■■□□ 15.6
SMNDC1O75940 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.48■■□□□ 1.035e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-219ENST00000636033 1940 ntTSL 519.73■□□□□ 0.755e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-216ENST00000635944 1960 ntTSL 517.79■□□□□ 0.445e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.395e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-239ENST00000636920 1989 ntTSL 517.22■□□□□ 0.355e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-217ENST00000635998 1845 ntTSL 517.05■□□□□ 0.325e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-233ENST00000636701 2158 ntTSL 516.61■□□□□ 0.255e-8■■■□□ 15.6
SMNDC1O75940 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.215e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-243ENST00000637095 2048 ntTSL 516.23■□□□□ 0.195e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.98■□□□□ 0.155e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.89■□□□□ 0.135e-8■■■□□ 15.6
SMNDC1O75940 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.85■□□□□ 0.135e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.8■□□□□ 0.125e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-222ENST00000636160 2328 ntTSL 515.74■□□□□ 0.115e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-247ENST00000637429 2558 ntTSL 515.57■□□□□ 0.085e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.065e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.39■□□□□ 0.055e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.055e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.38■□□□□ 0.055e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-241ENST00000637013 2649 ntTSL 515.35■□□□□ 0.055e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.24■□□□□ 0.035e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-245ENST00000637244 3151 ntTSL 1 (best)15.16■□□□□ 0.025e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-228ENST00000636494 1975 ntTSL 515.03■□□□□ -05e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-236ENST00000636815 1724 ntTSL 514.9□□□□□ -0.025e-8■■■□□ 15.6
SMNDC1O75940 RNF44-205ENST00000508478 662 ntTSL 314.5□□□□□ -0.097e-15■■■□□ 15.6
SMNDC1O75940 ASAH1-202ENST00000314146 1690 ntTSL 1 (best) BASIC12.83□□□□□ -0.365e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-269ENST00000638069 3068 ntTSL 512.73□□□□□ -0.375e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-207ENST00000519468 746 ntTSL 312.55□□□□□ -0.45e-8■■■□□ 15.6
SMNDC1O75940 SSBP3-210ENST00000525990 701 ntTSL 210.86□□□□□ -0.675e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-268ENST00000638028 2393 ntTSL 29.84□□□□□ -0.835e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-248ENST00000637484 2304 ntTSL 59.84□□□□□ -0.835e-8■■■□□ 15.6
SMNDC1O75940 GPBP1-208ENST00000514387 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.855e-8■■■□□ 15.6
SMNDC1O75940 GPBP1-206ENST00000513524 529 ntTSL 59.37□□□□□ -0.915e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC9.35□□□□□ -0.915e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-211ENST00000521542 1869 ntTSL 49.26□□□□□ -0.935e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-204ENST00000517409 740 ntTSL 39.2□□□□□ -0.945e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-214ENST00000635756 1589 ntTSL 58.74□□□□□ -1.015e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-220ENST00000636050 2546 ntTSL 58.34□□□□□ -1.075e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC8.21□□□□□ -1.095e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-230ENST00000636563 1891 ntTSL 58.18□□□□□ -1.15e-8■■■□□ 15.6
SMNDC1O75940 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC8.01□□□□□ -1.135e-8■■■□□ 15.6
SMNDC1O75940 GPBP1-202ENST00000309096 1385 ntTSL 27.94□□□□□ -1.145e-8■■■□□ 15.6
SMNDC1O75940 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.175e-8■■■□□ 15.6
Retrieved 100 of 11,362 protein–RNA pairs in 174.2 ms