Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC007322.3-201ENST00000426526 701 ntBASIC19.46■□□□□ 0.71
PROM1O43490 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
PROM1O43490 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PROM1O43490 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PROM1O43490 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PROM1O43490 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PROM1O43490 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PROM1O43490 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PROM1O43490 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.46■□□□□ 0.71
PROM1O43490 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.45■□□□□ 0.7
PROM1O43490 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PROM1O43490 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
PROM1O43490 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.45■□□□□ 0.7
PROM1O43490 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.45■□□□□ 0.7
PROM1O43490 CNN2P6-201ENST00000439038 900 ntBASIC19.45■□□□□ 0.7
PROM1O43490 CDV3P1-201ENST00000471403 739 ntBASIC19.45■□□□□ 0.7
PROM1O43490 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.45■□□□□ 0.7
PROM1O43490 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.45■□□□□ 0.7
PROM1O43490 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.45■□□□□ 0.7
PROM1O43490 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PROM1O43490 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PROM1O43490 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PROM1O43490 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.44■□□□□ 0.7
PROM1O43490 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
PROM1O43490 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.44■□□□□ 0.7
PROM1O43490 AL162412.1-201ENST00000567129 965 ntBASIC19.44■□□□□ 0.7
PROM1O43490 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.44■□□□□ 0.7
PROM1O43490 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.44■□□□□ 0.7
PROM1O43490 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PROM1O43490 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PROM1O43490 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
PROM1O43490 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
PROM1O43490 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.44■□□□□ 0.7
PROM1O43490 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PROM1O43490 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.44■□□□□ 0.7
PROM1O43490 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
PROM1O43490 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
PROM1O43490 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.43■□□□□ 0.7
PROM1O43490 AC027702.1-201ENST00000563810 1770 ntBASIC19.43■□□□□ 0.7
PROM1O43490 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PROM1O43490 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.43■□□□□ 0.7
PROM1O43490 AC004911.1-201ENST00000416316 871 ntBASIC19.43■□□□□ 0.7
PROM1O43490 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.43■□□□□ 0.7
PROM1O43490 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.43■□□□□ 0.7
PROM1O43490 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.43■□□□□ 0.7
PROM1O43490 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.43■□□□□ 0.7
PROM1O43490 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
PROM1O43490 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PROM1O43490 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.42■□□□□ 0.7
PROM1O43490 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.42■□□□□ 0.7
PROM1O43490 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PROM1O43490 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.42■□□□□ 0.7
PROM1O43490 AC007225.1-201ENST00000566331 1836 ntBASIC19.42■□□□□ 0.7
PROM1O43490 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.42■□□□□ 0.7
PROM1O43490 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.42■□□□□ 0.7
PROM1O43490 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.42■□□□□ 0.7
PROM1O43490 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.42■□□□□ 0.7
PROM1O43490 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.42■□□□□ 0.7
PROM1O43490 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.42■□□□□ 0.7
PROM1O43490 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.42■□□□□ 0.7
PROM1O43490 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PROM1O43490 AC231657.2-201ENST00000624556 255 ntBASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms