Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC35.57■■■■□ 3.28
CUX2O14529 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
CUX2O14529 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC35.56■■■■□ 3.28
CUX2O14529 COPE-203ENST00000351079 907 ntTSL 2 BASIC35.56■■■■□ 3.28
CUX2O14529 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
CUX2O14529 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC35.56■■■■□ 3.28
CUX2O14529 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC35.56■■■■□ 3.28
CUX2O14529 AL691432.3-201ENST00000621860 400 ntBASIC35.56■■■■□ 3.28
CUX2O14529 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC35.56■■■■□ 3.28
CUX2O14529 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC35.56■■■■□ 3.28
CUX2O14529 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC35.55■■■■□ 3.28
CUX2O14529 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
CUX2O14529 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
CUX2O14529 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
CUX2O14529 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC35.55■■■■□ 3.28
CUX2O14529 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC35.55■■■■□ 3.28
CUX2O14529 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
CUX2O14529 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
CUX2O14529 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC35.55■■■■□ 3.28
CUX2O14529 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
CUX2O14529 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC35.55■■■■□ 3.28
CUX2O14529 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC35.54■■■■□ 3.28
CUX2O14529 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CUX2O14529 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC35.54■■■■□ 3.28
CUX2O14529 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CUX2O14529 SAPCD2P1-201ENST00000395413 1184 ntBASIC35.54■■■■□ 3.28
CUX2O14529 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC35.54■■■■□ 3.28
CUX2O14529 CLN6-204ENST00000564752 900 ntTSL 3 BASIC35.54■■■■□ 3.28
CUX2O14529 AC073195.1-201ENST00000607241 877 ntBASIC35.54■■■■□ 3.28
CUX2O14529 CLN6-214ENST00000636314 442 ntTSL 3 BASIC35.54■■■■□ 3.28
CUX2O14529 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CUX2O14529 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CUX2O14529 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC35.53■■■■□ 3.28
CUX2O14529 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC35.53■■■■□ 3.28
CUX2O14529 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
CUX2O14529 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
CUX2O14529 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
CUX2O14529 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC35.53■■■■□ 3.28
CUX2O14529 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC35.53■■■■□ 3.28
CUX2O14529 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC35.53■■■■□ 3.28
CUX2O14529 FAM8A6P-201ENST00000407496 1135 ntBASIC35.53■■■■□ 3.28
CUX2O14529 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC35.53■■■■□ 3.28
CUX2O14529 AC005829.2-201ENST00000571422 1056 ntBASIC35.53■■■■□ 3.28
CUX2O14529 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC35.53■■■■□ 3.28
CUX2O14529 AC004263.2-201ENST00000617183 678 ntBASIC35.53■■■■□ 3.28
CUX2O14529 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC35.53■■■■□ 3.28
CUX2O14529 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC35.53■■■■□ 3.28
CUX2O14529 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
CUX2O14529 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC35.52■■■■□ 3.28
CUX2O14529 CLEC4GP1-201ENST00000596555 870 ntBASIC35.52■■■■□ 3.28
CUX2O14529 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC35.52■■■■□ 3.28
CUX2O14529 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC35.52■■■■□ 3.28
CUX2O14529 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC35.51■■■■□ 3.28
CUX2O14529 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC35.51■■■■□ 3.28
CUX2O14529 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC35.51■■■■□ 3.28
CUX2O14529 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC35.51■■■■□ 3.28
CUX2O14529 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC35.51■■■■□ 3.28
CUX2O14529 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC35.51■■■■□ 3.27
CUX2O14529 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
CUX2O14529 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC35.5■■■■□ 3.27
CUX2O14529 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC35.5■■■■□ 3.27
CUX2O14529 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC35.5■■■■□ 3.27
CUX2O14529 KRT16P5-201ENST00000455284 522 ntBASIC35.5■■■■□ 3.27
CUX2O14529 FDX2-207ENST00000494368 584 ntTSL 4 BASIC35.5■■■■□ 3.27
CUX2O14529 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC35.5■■■■□ 3.27
CUX2O14529 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC35.5■■■■□ 3.27
CUX2O14529 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC35.5■■■■□ 3.27
CUX2O14529 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
CUX2O14529 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
CUX2O14529 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC35.5■■■■□ 3.27
CUX2O14529 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
CUX2O14529 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
CUX2O14529 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
CUX2O14529 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC35.49■■■■□ 3.27
CUX2O14529 AK4P3-201ENST00000418260 669 ntBASIC35.49■■■■□ 3.27
CUX2O14529 SAPCD2P2-201ENST00000431719 1174 ntBASIC35.49■■■■□ 3.27
CUX2O14529 AP000347.1-202ENST00000435868 847 ntBASIC35.49■■■■□ 3.27
CUX2O14529 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC35.49■■■■□ 3.27
CUX2O14529 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC35.49■■■■□ 3.27
CUX2O14529 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
CUX2O14529 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC35.48■■■■□ 3.27
CUX2O14529 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC35.48■■■■□ 3.27
CUX2O14529 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
CUX2O14529 CLN6-221ENST00000637494 765 ntTSL 5 BASIC35.48■■■■□ 3.27
CUX2O14529 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC35.48■■■■□ 3.27
CUX2O14529 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
CUX2O14529 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC35.48■■■■□ 3.27
CUX2O14529 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
CUX2O14529 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
CUX2O14529 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC35.48■■■■□ 3.27
CUX2O14529 KRT18P16-201ENST00000510337 1294 ntBASIC35.48■■■■□ 3.27
CUX2O14529 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC35.48■■■■□ 3.27
CUX2O14529 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
CUX2O14529 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
CUX2O14529 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC35.47■■■■□ 3.27
CUX2O14529 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
CUX2O14529 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC35.47■■■■□ 3.27
CUX2O14529 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
CUX2O14529 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
CUX2O14529 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms