Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
SMKR1H3BMG3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 AL158211.5-201ENST00000623583 2518 ntBASIC14.97□□□□□ -0.01
SMKR1H3BMG3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 TCF3P1-201ENST00000423021 1937 ntBASIC14.97□□□□□ -0.01
SMKR1H3BMG3 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 AP000974.1-201ENST00000623909 2387 ntBASIC14.97□□□□□ -0.01
SMKR1H3BMG3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
SMKR1H3BMG3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 AC099791.2-201ENST00000605725 427 ntBASIC14.96□□□□□ -0.01
SMKR1H3BMG3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SMKR1H3BMG3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.02
SMKR1H3BMG3 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
SMKR1H3BMG3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
SMKR1H3BMG3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
SMKR1H3BMG3 AC004408.2-201ENST00000623613 2777 ntBASIC14.96□□□□□ -0.02
SMKR1H3BMG3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
SMKR1H3BMG3 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
SMKR1H3BMG3 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 MIR4787-201ENST00000607364 84 ntBASIC14.95□□□□□ -0.02
SMKR1H3BMG3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 BX323043.1-201ENST00000641006 1765 ntBASIC14.95□□□□□ -0.02
SMKR1H3BMG3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SMKR1H3BMG3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SMKR1H3BMG3 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms