Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A6A6NMZ7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL6A6A6NMZ7 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 CRYGFP-201ENST00000418459 633 ntBASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL6A6A6NMZ7 AC027702.1-201ENST00000563810 1770 ntBASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 AC087633.2-202ENST00000565166 1439 ntBASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A6A6NMZ7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 KRT18P48-201ENST00000434763 852 ntBASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A6A6NMZ7 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 FAM197Y1-201ENST00000421178 764 ntBASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 AL137013.1-201ENST00000432946 1228 ntBASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL6A6A6NMZ7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 AC104076.2-201ENST00000448912 469 ntBASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 KRT16P5-201ENST00000455284 522 ntBASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 AC116562.2-201ENST00000507042 360 ntBASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 AP000525.1-201ENST00000608286 694 ntBASIC18.6■□□□□ 0.57
COL6A6A6NMZ7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 AK4P3-201ENST00000418260 669 ntBASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 FITM1-202ENST00000559294 800 ntBASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.59■□□□□ 0.57
COL6A6A6NMZ7 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms