Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC85CA6NKD9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC85CA6NKD9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC23.08■■□□□ 1.29
CCDC85CA6NKD9 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC85CA6NKD9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC85CA6NKD9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
CCDC85CA6NKD9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 AC007322.3-201ENST00000426526 701 ntBASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 CR392000.1-201ENST00000624770 1228 ntBASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 LINC00526-201ENST00000581067 1875 ntBASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.07■■□□□ 1.28
CCDC85CA6NKD9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC85CA6NKD9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC85CA6NKD9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC85CA6NKD9 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC85CA6NKD9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC23.06■■□□□ 1.28
CCDC85CA6NKD9 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC85CA6NKD9 CR769767.2-201ENST00000622735 460 ntBASIC23.06■■□□□ 1.28
CCDC85CA6NKD9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.06■■□□□ 1.28
CCDC85CA6NKD9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 PGM5P4-201ENST00000421970 445 ntBASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 RN7SL510P-201ENST00000581311 263 ntBASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 AC069148.1-201ENST00000608741 768 ntBASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC85CA6NKD9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 TSPY5P-201ENST00000426936 936 ntBASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 EGLN1P1-201ENST00000531623 762 ntBASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CCDC85CA6NKD9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC85CA6NKD9 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 KRT8P10-201ENST00000450021 1447 ntBASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC23.02■■□□□ 1.28
CCDC85CA6NKD9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms